BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0447.p (569 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310055|ref|YP_003774147.1| methyl-accepting chemotaxis tra... 631 0.0 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 434 e-123 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 425 e-120 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 419 e-118 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 415 e-117 >gi|300310055|ref|YP_003774147.1| methyl-accepting chemotaxis transducer transmembrane protein I [Herbaspirillum seropedicae SmR1] Length = 547 Score = 631 bits (1627), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/568 (63%), Positives = 441/568 (77%), Gaps = 21/568 (3%) Query: 1 MKNWKIGIRLTIGFGIVLALLVAGAMFGLRQVAKLNDRVEFITSVDEGKLLALSKVQFAV 60 MKN KIG RL +GF VL LLVA A FGL+QV++LNDR+ F+TSVDEGKL ALSKVQFAV Sbjct: 1 MKNLKIGHRLGLGFAAVLILLVAVAAFGLQQVSRLNDRIVFLTSVDEGKLEALSKVQFAV 60 Query: 61 GLRAIAARNLVLVTDPALQKSDIELVAKAQKDIDSGMAELTALMKNPADATAQERNMLEQ 120 GLRAIAARNL LV A QK+D++LV +Q+DID+GMAEL LM++PA ++ QER MLE+ Sbjct: 61 GLRAIAARNLTLVQSAADQKNDLDLVGSSQQDIDAGMAELGRLMQHPA-SSPQEREMLEK 119 Query: 121 LRALEAKYLPIATKIGALATTQQTEAAKAALVADCMPLLKQVIAHINEFNVVMRASTTES 180 LR LEA+YLP+A I LAT+QQTEAA+A+LV DCMP+L +VIA + +FN ++R ++ + Sbjct: 120 LRQLEAQYLPVAVNIVKLATSQQTEAARASLVKDCMPILNRVIAQVEQFNKLLRKNSEAN 179 Query: 181 VTAAQEAYEVSKWTMLTLSAVSLLLGSLIAWWLTRSISRPLKEAVTIAQNVSAGDLTSTI 240 V A+ AY ++KWTML S +L LG ++AW LTRSISRPL +AV++AQ+V +GDL S I Sbjct: 180 VEEAEAAYTLAKWTMLAASLAALTLGGMVAWLLTRSISRPLAQAVSVAQSVQSGDLGSRI 239 Query: 241 RVDSKDELGQLKLALKEMNDNLLRIVGDVRHGTDTIATASGEIASGNLDLSSRTEQQAGS 300 V SKDELGQL ALK MND+L+ IVG+VR GTDTIA AS EI GN+DLS+RTEQQAGS Sbjct: 240 EVTSKDELGQLMSALKGMNDSLVNIVGEVRQGTDTIAVASDEIKQGNMDLSNRTEQQAGS 299 Query: 301 LQETASAMEELTATVRQNAENAQQANKLATTASDIAVKGGAVVARVVETMASINESSKKV 360 LQETASAME+LTATV+QNA+NA++AN+LA AS +A +GGA V RVV+TM SI+ SS K+ Sbjct: 300 LQETASAMEQLTATVKQNADNAREANRLADNASQVAARGGAAVGRVVDTMNSISASSHKI 359 Query: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLI 420 VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEI+ LI Sbjct: 360 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAVAAKEIEALI 419 Query: 421 GTSVAKVDAGAALVDEAGATMGEILDSIQRVTGIVGDISSASDEQTRGIEQINQAITQMD 480 SVAKV G V EAG+TM E+++SI+ VT I+ DIS+AS EQT G+EQIN+A+ Q+D Sbjct: 420 NESVAKVVTGEKQVSEAGSTMHEVVESIKSVTHIMHDISAASAEQTSGLEQINRAVAQID 479 Query: 481 QVTQQNAALVEEAAAAAASMQSQTSSLAELVSVFKLDEQHMQYETAQAAPSIALKPGHHA 540 + TQQNAALVE+AAAAAASMQ Q+ +L E+VS+FKL AQ AP H Sbjct: 480 EATQQNAALVEQAAAAAASMQQQSVALTEVVSIFKLSR-------AQNAP-------QHL 525 Query: 541 VSAPATQVHHLPKPVSAPSLSMDHLSYA 568 SA VS P + M+ LSYA Sbjct: 526 RSAEREDA-----AVSGP-VHMEALSYA 547 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 434 bits (1117), Expect = e-123, Method: Compositional matrix adjust. Identities = 268/520 (51%), Positives = 348/520 (66%), Gaps = 9/520 (1%) Query: 1 MKNWKIGIRLTIGFGIVLALLVAGAMFGLRQVAKLNDRVEFITSVDEGKLLALSKVQFAV 60 MKN KIG+RL IGF +L L+ G+ ++ + D + D+ +AL K + AV Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGD------ATDDMTRIALKKERDAV 54 Query: 61 GLRAIAARNLVLVTDPALQKSDIELVAKAQKDIDSGMAELTALMKN--PADATAQERNML 118 A N V T ++ D A QK ID+ A ++ L K A A+E+ + Sbjct: 55 QWHAAIKENGVR-TFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLF 113 Query: 119 EQLRALEAKYLPIATKIGALATTQQTEAAKAALVADCMPLLKQVIAHINEFNVVMRASTT 178 +++ L A Y I + T A+ + ++ + + + Sbjct: 114 DEVGKLRAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVID 173 Query: 179 ESVTAAQEAYEVSKWTMLTLSAVSLLLGSLIAWWLTRSISRPLKEAVTIAQNVSAGDLTS 238 ++ A Y + +L L A+ ++LG+ +AW LTRSI+RPL +AVTIA+ V+AGDLTS Sbjct: 174 QTAAAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTS 233 Query: 239 TIRVDSKDELGQLKLALKEMNDNLLRIVGDVRHGTDTIATASGEIASGNLDLSSRTEQQA 298 I S+DE G+L ALK MN NLL IVG VR GT+TI TAS EIA+GNLDLS+RTE QA Sbjct: 234 RIDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQA 293 Query: 299 GSLQETASAMEELTATVRQNAENAQQANKLATTASDIAVKGGAVVARVVETMASINESSK 358 GSL+ETASAME+LT+TV+QNA+NA+QAN+LA +AS +A +GGAVV +VV TM +I+ SS+ Sbjct: 294 GSLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQ 353 Query: 359 KVVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQ 418 K+ DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQ Sbjct: 354 KIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQ 413 Query: 419 LIGTSVAKVDAGAALVDEAGATMGEILDSIQRVTGIVGDISSASDEQTRGIEQINQAITQ 478 LI SV KVD G+ LV AG TM E++ S+ RVT +V +I+ AS EQ+ GIEQ+N AIT Sbjct: 414 LIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITH 473 Query: 479 MDQVTQQNAALVEEAAAAAASMQSQTSSLAELVSVFKLDE 518 +D+ TQQNAALVE+AAAAA SMQ Q +SL + VSVF+L++ Sbjct: 474 IDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRLED 513 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 425 bits (1092), Expect = e-120, Method: Compositional matrix adjust. Identities = 266/563 (47%), Positives = 359/563 (63%), Gaps = 23/563 (4%) Query: 3 NW----KIGIRLTIGFGIVLALLVAGAMFGLRQVAKLNDRV-----EFITSVDEGKLLAL 53 NW KI +L F +VL ++ F ++A +N ++ S+D AL Sbjct: 2 NWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSID-----AL 56 Query: 54 SKVQFAVGLRAIAARNLVLVTDPALQKSDIELVAKAQKDIDSGMAELTALMKNPADATAQ 113 SK+ A+ +L D +K+ E K + +A L+ P + Sbjct: 57 SKMSLALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEP-----R 111 Query: 114 ERNMLEQLRALEAKYLPIATKIGALATTQQTEAAKAALVADCMPLLKQVIAHINEFNVVM 173 E+ + ++ A Y ++ AL Q +AA A + + P+ +++ I E + V Sbjct: 112 EKELYPEIERNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVN 171 Query: 174 RASTTESVTAAQEAYEVSKWTMLTLSAVSLLLGSLIAWWLTRSISRPLKEAVTIAQNVSA 233 S A Y + +L L ++L ++WW+ R ++RPL AV IA+ V+A Sbjct: 172 SKGAALSDADADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAA 231 Query: 234 GDLTSTIRVDSKDELGQLKLALKEMNDNLLRIVGDVRHGTDTIATASGEIASGNLDLSSR 293 GDLT+ I +DE GQL AL++MN NLL IV +VR GTDTI TAS EIA+GN+DLSSR Sbjct: 232 GDLTADIPTAHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSR 291 Query: 294 TEQQAGSLQETASAMEELTATVRQNAENAQQANKLATTASDIAVKGGAVVARVVETMASI 353 TEQQAG+L+ETASAMEELT+TVRQN++NA+QAN+LA AS++A GG VV +VV TM++I Sbjct: 292 TEQQAGALEETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAI 351 Query: 354 NESSKKVVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA 413 N+SS+K+VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AA Sbjct: 352 NDSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAA 411 Query: 414 KEIKQLIGTSVAKVDAGAALVDEAGATMGEILDSIQRVTGIVGDISSASDEQTRGIEQIN 473 EIK LI SVAKVD G+ LVDEAG TM E++ S++RV+ IV +I++A EQT+GIEQIN Sbjct: 412 HEIKALIDDSVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQIN 471 Query: 474 QAITQMDQVTQQNAALVEEAAAAAASMQSQTSSLAELVSVFKLDEQHMQYETAQAA---- 529 A+ QMD+ TQQNAALVE+AAAAA ++Q Q L+E VSVF+LD QH+ ++AA Sbjct: 472 NAVVQMDENTQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLDAQHVPVVVSRAAATAQ 531 Query: 530 PSIALKPGHHAVSAPATQVHHLP 552 P + P A++ ++V P Sbjct: 532 PERDITPARPALAQSRSKVMARP 554 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 419 bits (1077), Expect = e-118, Method: Compositional matrix adjust. Identities = 264/525 (50%), Positives = 358/525 (68%), Gaps = 23/525 (4%) Query: 1 MKNWKIGIRLTIGFGIVLALLVAGAMFGLRQVAKLNDRVEFITSVDEGKLLALSKVQFAV 60 N KI +L + F V+ L V +F +R++ +N + + + A +Q ++ Sbjct: 4 FNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQASL 63 Query: 61 GLRAIAARNLVLVTDPALQ-------KSDIELVAKAQKDIDSGMAELTALMKNPADATAQ 113 I+ +V PA + KS ++++AK + ++ ++E A+ Sbjct: 64 PRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISE------------AE 111 Query: 114 ERNMLEQLRALEAKYLPIATKIGALATTQQTEAAKAALVADCMPLLKQVIAHINEFNVVM 173 E+ + E+ A YL I ++ ++ + E A+A D + +I +++E V Sbjct: 112 EKVLYEKFSKSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVN 171 Query: 174 RASTTESVTAAQEAYE-VSKWTMLTLSAVSLL-LGSLIAWWLTRSISRPLKEAVTIAQNV 231 A + S A++ Y + W + L+A+ ++ LG +A + R++SRPL EAV +A+ V Sbjct: 172 DAGSKRSDDMAEQVYRSATLWIIGLLAAIVVIALG--LAVMVARAVSRPLNEAVAVAERV 229 Query: 232 SAGDLTSTIRVDSKDELGQLKLALKEMNDNLLRIVGDVRHGTDTIATASGEIASGNLDLS 291 + GDLT IR S DE G L +L+ MND+L +IVG+VR GTDTI TAS EIA+GNLDLS Sbjct: 230 AQGDLTMDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLS 289 Query: 292 SRTEQQAGSLQETASAMEELTATVRQNAENAQQANKLATTASDIAVKGGAVVARVVETMA 351 SRTE+QAGSL+ETASAMEELTATV+QNA+NA+QAN+LA +ASDIA +GGAVV +VV+TM Sbjct: 290 SRTEEQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTME 349 Query: 352 SINESSKKVVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS 411 I ESS ++ DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS Sbjct: 350 GITESSNRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS 409 Query: 412 AAKEIKQLIGTSVAKVDAGAALVDEAGATMGEILDSIQRVTGIVGDISSASDEQTRGIEQ 471 AAKEIKQLI SV KV AG+ LV+ AGATM E++ S++RVT +V +IS+AS+EQ+ GIE+ Sbjct: 410 AAKEIKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEE 469 Query: 472 INQAITQMDQVTQQNAALVEEAAAAAASMQSQTSSLAELVSVFKL 516 IN+AITQMD+VTQQNAALVEEAAAAA S+Q Q + L+++VSVFKL Sbjct: 470 INRAITQMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 415 bits (1066), Expect = e-117, Method: Compositional matrix adjust. Identities = 271/561 (48%), Positives = 362/561 (64%), Gaps = 20/561 (3%) Query: 1 MKNWKIGIRLTIGFGIVLALLVAGAMFGLRQVAKLNDRVEFITSVDEGKLLALSKVQFAV 60 + + KI +RL F ++ ++ A G++ + ++D + I + K+ +++ V Sbjct: 4 ISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKV 63 Query: 61 GLRAIAARNLVLVTDPALQKSDIELVAKAQKDIDSGMAELTALMKNPADATAQERNMLEQ 120 A + RN ++ +P QK ++ + + +AE+ P + +L Sbjct: 64 NTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGS-----ELLAA 118 Query: 121 LRALEAKYLPIATKIGALATTQQTEAAKAALVADCMPLLKQVIAHINEFNVVMRASTTES 180 L+ A Y K+ L Q+ + A A L +P+ + A + E V ++S + Sbjct: 119 LKQARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEM-VSFQSSLMDK 177 Query: 181 VTAAQEAYEVSKWT-MLTLSAVSLLLGSLIAWWLTRSISRPLKEAVTIAQNVSAGDLTST 239 A S ML LS V++LL +L A +TRSI+RPL EAV +A V+AGDLT Sbjct: 178 SAERASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQ 237 Query: 240 IRVDSKDELGQLKLALKEMNDNLLRIVGDVRHGTDTIATASGEIASGNLDLSSRTEQQAG 299 I SKDE G L ALK MNDNL RIV +VR GTDTI TAS EIA+GNLDLSSRTEQQAG Sbjct: 238 IEATSKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAG 297 Query: 300 SLQETASAMEELTATVRQNAENAQQANKLATTASDIAVKGGAVVARVVETMASINESSKK 359 +L+ETASAMEELT+TVRQNA+NA+QAN LA TAS +A++GG+VV VV+TM IN++S+K Sbjct: 298 ALEETASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRK 357 Query: 360 VVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQL 419 +VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK L Sbjct: 358 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSL 417 Query: 420 IGTSVAKVDAGAALVDEAGATMGEILDSIQRVTGIVGDISSASDEQTRGIEQINQAITQM 479 I SV +V++G+ LV +AGATM E++ S++RVT +V +I++AS EQ+ GIEQINQAI QM Sbjct: 418 IDASVERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQM 477 Query: 480 DQVTQQNAALVEEAAAAAASMQSQTSSLAELVSVFKLDEQHMQ------------YETAQ 527 D+VTQQNAALVE+AAAAA S+Q Q+ L++ V +F+L H + A Sbjct: 478 DEVTQQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQPSPLSAPVQRSVQVAP 537 Query: 528 AAPSIALKPGHHAVSAPATQV 548 A P +A KP SAPA + Sbjct: 538 ARPVLARKPVTR-TSAPAKSI 557 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.125 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,241,618 Number of extensions: 42383 Number of successful extensions: 620 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 328 Number of HSP's successfully gapped: 72 Length of query: 569 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 479 Effective length of database: 1,193,720 Effective search space: 571791880 Effective search space used: 571791880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)