BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0446.p (157 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 259 5e-71 gi|300311006|ref|YP_003775098.1| transcription regulator protein... 121 3e-29 gi|300312130|ref|YP_003776222.1| glutamate uptake transcription ... 102 2e-23 gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 101 2e-23 gi|300312490|ref|YP_003776582.1| transcription regulator protein... 101 3e-23 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 259 bits (663), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 124/151 (82%), Positives = 140/151 (92%) Query: 1 MELDAIDLRILSTLQQNSALSNLELSSKINLSPSPTLARVKRLENEGIISRYVALGNPHL 60 MELD DLRIL+ LQ+NS++SNLEL+S+INLSPSPTLARVKRLE+EGIISRYVAL +PHL Sbjct: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHL 60 Query: 61 LGLKVNVFIKISLEKQESATLAQFEEAVSAFDEVMEVYLMTGDEDYLLRLVVPDLQALEH 120 LGLKVNVF+K+ LE+Q + LAQFE AVSAFDEVMEVYLMTGDEDYLLR+VVPDL LEH Sbjct: 61 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH 120 Query: 121 FVLDHLTKIPGIKNIRSSFALKQVKYKTALP 151 F++DHLTKIPGIKNIRSSFALKQ+KYKTALP Sbjct: 121 FIVDHLTKIPGIKNIRSSFALKQIKYKTALP 151 >gi|300311006|ref|YP_003775098.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 121 bits (303), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 94/152 (61%) Query: 1 MELDAIDLRILSTLQQNSALSNLELSSKINLSPSPTLARVKRLENEGIISRYVALGNPHL 60 + +D DL +L+ LQ++ ++N L K++LS S RV+RLE +I RY A+ +P + Sbjct: 4 INVDRYDLALLTELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAV 63 Query: 61 LGLKVNVFIKISLEKQESATLAQFEEAVSAFDEVMEVYLMTGDEDYLLRLVVPDLQALEH 120 +GL V F ++L++Q FE+AV EV E + +TG+ DY+LR+V PDL A Sbjct: 64 VGLGVTAFTTVTLDRQGETRGELFEKAVETMPEVTECFSVTGEGDYILRIVAPDLAAFSE 123 Query: 121 FVLDHLTKIPGIKNIRSSFALKQVKYKTALPL 152 F++ L ++PG+ N++S+ LK+VK LPL Sbjct: 124 FMMTRLLRLPGVTNVKSNITLKKVKQSHELPL 155 >gi|300312130|ref|YP_003776222.1| glutamate uptake transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 102 bits (254), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 91/150 (60%), Gaps = 1/150 (0%) Query: 3 LDAIDLRILSTLQQNSALSNLELSSKINLSPSPTLARVKRLENEGIISRYVALGNPHLLG 62 +D D RIL LQ++S + E++ +NLS +P R++RLE EG+I R V L + L Sbjct: 2 IDRTDRRILEILQEDSTRAVAEIAECVNLSTTPCWRRIQRLEAEGVIKRRVVLLDAEKLN 61 Query: 63 LKVNVFIKISLEKQESATLAQFEEAVSAFDEVMEVYLMTGDEDYLLRLVVPDLQALEHFV 122 + V V ++I + ++ L +F + V+ EV+EV+ M+G DY+L+++VP++ A + V Sbjct: 62 VSVTVLVEIKTRQHSASWLKKFRDVVTCIPEVVEVHRMSGHIDYMLKVMVPNIGAYDS-V 120 Query: 123 LDHLTKIPGIKNIRSSFALKQVKYKTALPL 152 L + ++ SSF+++ +K TALPL Sbjct: 121 YKRLISAVELDDVSSSFSMETLKSTTALPL 150 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 101 bits (252), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 92/150 (61%) Query: 3 LDAIDLRILSTLQQNSALSNLELSSKINLSPSPTLARVKRLENEGIISRYVALGNPHLLG 62 LD I +IL+ LQ + +SN++L++++NLSP+ L RV++L+ G I Y A NP LL Sbjct: 4 LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63 Query: 63 LKVNVFIKISLEKQESATLAQFEEAVSAFDEVMEVYLMTGDEDYLLRLVVPDLQALEHFV 122 + + VFI++ L++ A+F+++V + E+ME +++ G DYL++ V D+ A F+ Sbjct: 64 VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 Query: 123 LDHLTKIPGIKNIRSSFALKQVKYKTALPL 152 L ++ G++ + +++VK LP+ Sbjct: 124 GKSLLQLKGVRETHTYAVMEEVKNTIRLPI 153 >gi|300312490|ref|YP_003776582.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 153 Score = 101 bits (252), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 82/145 (56%) Query: 1 MELDAIDLRILSTLQQNSALSNLELSSKINLSPSPTLARVKRLENEGIISRYVALGNPHL 60 M LD +D RIL LQ++ + N EL+ K+ +S + KRL EG + A+ +P Sbjct: 1 MSLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMEEGYVKEVRAILDPEK 60 Query: 61 LGLKVNVFIKISLEKQESATLAQFEEAVSAFDEVMEVYLMTGDEDYLLRLVVPDLQALEH 120 LGL V V + + L++ + A+FE+AV V E L+ G+ DY ++L V DLQA Sbjct: 61 LGLPVLVTVGVVLDRSTPESFAEFEKAVRDIAAVQECLLLAGEFDYWIKLRVKDLQAFNR 120 Query: 121 FVLDHLTKIPGIKNIRSSFALKQVK 145 + L ++PG++ +RS F L +VK Sbjct: 121 LHANTLLRLPGVRQLRSFFVLNEVK 145 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 411,054 Number of extensions: 13930 Number of successful extensions: 63 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 60 Number of HSP's successfully gapped: 9 Length of query: 157 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 79 Effective length of database: 1,250,540 Effective search space: 98792660 Effective search space used: 98792660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)