BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0443.p
         (273 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309828|ref|YP_003773920.1| bacitracin resistance undecapre...   493   e-141
gi|300309829|ref|YP_003773921.1| bacitracin resistance undecapre...    91   7e-20

>gi|300309828|ref|YP_003773920.1| bacitracin resistance undecaprenol
           kinase 2 [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score =  493 bits (1269), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/273 (88%), Positives = 257/273 (94%)

Query: 1   MGIVEGLTEFLPISSTGHLILAGSLLNFAGPGFSKEKVDVFEIVIQAGAILAVCWEYRVR 60
           MGIVEGLTEFLPISSTGHLILA SLL F GP  SKEK DVFEIVIQAGAILAVCWEYRVR
Sbjct: 12  MGIVEGLTEFLPISSTGHLILANSLLQFTGPDLSKEKADVFEIVIQAGAILAVCWEYRVR 71

Query: 61  IASVLVGMFSDRKAQRLVINLIIAFLPAAILGFLFSKKIKAVLFAPVPVAIAFIVGGLVI 120
           IA+VL GMF+DRKAQRLV+NLIIAFLPAAILGFLFS++IK VLF PV VAIAFIVGGL+I
Sbjct: 72  IATVLTGMFTDRKAQRLVVNLIIAFLPAAILGFLFSRRIKEVLFNPVSVAIAFIVGGLII 131

Query: 121 LWVERRNKGRMGYASSRIDSVDDMTPLDAFKVGCAQAFALIPGTSRSGATIIGGMMFGLS 180
           LWVERRNK RM  AS+R+++VDDMTPLDA KVG AQAFALIPGTSRSGATIIGGMMFGLS
Sbjct: 132 LWVERRNKDRMSMASARVETVDDMTPLDALKVGIAQAFALIPGTSRSGATIIGGMMFGLS 191

Query: 181 RKAATEFSFFLAIPTLFAATIYSLYKERALLSAADVPLFTVGTVAAFVSAFLCVRWLLRY 240
           RKAATEFSFFLAIPTLFAATIYSLYKERALLSAADVPLFTVGTVAAFVSAFLCVRWLLRY
Sbjct: 192 RKAATEFSFFLAIPTLFAATIYSLYKERALLSAADVPLFTVGTVAAFVSAFLCVRWLLRY 251

Query: 241 ISSHDFTVFAWYRILFGLVILGTAYTGVVAWVE 273
           ISSHDFT+FAWYRI+FG+++L TAYTGVVAWVE
Sbjct: 252 ISSHDFTIFAWYRIIFGIIVLVTAYTGVVAWVE 284


>gi|300309829|ref|YP_003773921.1| bacitracin resistance undecaprenol
           kinase 2 [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score = 91.3 bits (225), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 129/277 (46%), Gaps = 35/277 (12%)

Query: 1   MGIVEGLTEFLPISSTGHLILAGSLLNFAGPGFSKEKVDVFEIVIQAGAILAVCWEYRVR 60
           +GIV+G+TE LPISST H+ +  +LL +  PG        F   +Q  A+ AV   +R  
Sbjct: 24  LGIVQGITELLPISSTAHMRIVPALLGWHDPG------SAFSAAMQLAALAAVISYFRRD 77

Query: 61  IASVLVGMFSDRKAQ-------RLVINLIIAFLPAAILGFLFSKKIKAVLFAPVPVAIAF 113
           +++V  G  +  + +       RL + +I+A +P  I G   S  + A      P+    
Sbjct: 78  VSAVTGGSLAAWRRRDFNDPMFRLAVAIILATIPIGIAGLSLSHVLNA---CGSPLRSLT 134

Query: 114 IVG----GLVILWVERRNKGRMGYASSRIDSVDDMTPLDAFKVGCAQAFALIPGTSRSGA 169
           ++G    G+ IL        R         SVD M   DA  VG AQ  ALIPG SRSG+
Sbjct: 135 VIGWSCVGMAILLAISEMVCR------HRRSVDQMRLRDALIVGLAQVGALIPGVSRSGS 188

Query: 170 TIIGGMMFGLSRKAATEFSFFLAIPTLFAATIYSLYKERALLSAADVPL-----FTVGTV 224
           T+   +     R+ A  FSF L +P +  A +    KE A+L  A +PL        G +
Sbjct: 189 TLTAALFLNFRREEAARFSFLLGLPAIALAGL----KELAVLLHAHIPLEAWGVLLFGLL 244

Query: 225 AAFVSAFLCVRWLLRYISSHDFTVFAWYRILFGLVIL 261
            A VSAF  +  L++++       F  YR + G  +L
Sbjct: 245 VASVSAFAAIWGLMKFLERFSTWPFIVYRAVLGAFLL 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 846,357
Number of extensions: 34106
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 2
Length of query: 273
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,222,130
Effective search space: 230982570
Effective search space used: 230982570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)