BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0442.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309829|ref|YP_003773921.1| bacitracin resistance undecapre...   488   e-139
gi|300309828|ref|YP_003773920.1| bacitracin resistance undecapre...    98   9e-22

>gi|300309829|ref|YP_003773921.1| bacitracin resistance undecaprenol
           kinase 2 [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score =  488 bits (1256), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 256/294 (87%), Positives = 275/294 (93%), Gaps = 4/294 (1%)

Query: 1   VANVCSAGLDIGFASLDYLQIGFLGVVQGITELLPISSTAHMRAQPYIVPAVLGWHDPGS 60
           +ANVCSAGLDIGFASL Y QIG LG+VQGITELLPISSTAHMR    IVPA+LGWHDPGS
Sbjct: 1   MANVCSAGLDIGFASLSYAQIGLLGIVQGITELLPISSTAHMR----IVPALLGWHDPGS 56

Query: 61  AFSAAMQLAALAAVVSYFWRDVTAVTSGSITAWRQRDFNSPMFRLAVAIVLATIPIGIAG 120
           AFSAAMQLAALAAV+SYF RDV+AVT GS+ AWR+RDFN PMFRLAVAI+LATIPIGIAG
Sbjct: 57  AFSAAMQLAALAAVISYFRRDVSAVTGGSLAAWRRRDFNDPMFRLAVAIILATIPIGIAG 116

Query: 121 LVLSHVLNACGSPLRSLSVIGWSCIAMAILLAIAELVCRHRRTVDQMRLSDALIVGIAQV 180
           L LSHVLNACGSPLRSL+VIGWSC+ MAILLAI+E+VCRHRR+VDQMRL DALIVG+AQV
Sbjct: 117 LSLSHVLNACGSPLRSLTVIGWSCVGMAILLAISEMVCRHRRSVDQMRLRDALIVGLAQV 176

Query: 181 GALIPGVSRSGSTLTAALFLNFKREEAARFSFLLGLPAIALAGLKELAVLLHAHIPLHAW 240
           GALIPGVSRSGSTLTAALFLNF+REEAARFSFLLGLPAIALAGLKELAVLLHAHIPL AW
Sbjct: 177 GALIPGVSRSGSTLTAALFLNFRREEAARFSFLLGLPAIALAGLKELAVLLHAHIPLEAW 236

Query: 241 SLLLFGLLVASVSAFCAIWGLMKFLERFSTWPFIVYRAALGVFLLVAVSKGFLQ 294
            +LLFGLLVASVSAF AIWGLMKFLERFSTWPFIVYRA LG FLLVAV++G+LQ
Sbjct: 237 GVLLFGLLVASVSAFAAIWGLMKFLERFSTWPFIVYRAVLGAFLLVAVAQGWLQ 290


>gi|300309828|ref|YP_003773920.1| bacitracin resistance undecaprenol
           kinase 2 [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score = 97.8 bits (242), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 135/293 (46%), Gaps = 51/293 (17%)

Query: 24  LGVVQGITELLPISSTAHMRAQPYIVPAVLGWHDP------GSAFSAAMQLAALAAVVSY 77
           +G+V+G+TE LPISST H+     +  ++L +  P         F   +Q  A+ AV   
Sbjct: 12  MGIVEGLTEFLPISSTGHL----ILANSLLQFTGPDLSKEKADVFEIVIQAGAILAVCWE 67

Query: 78  FWRDVTAVTSGSITAWRQRDFNSPMFRLAVAIVLATIPIGIAGLVLSHVLNACGSPLRSL 137
           +   +  V +G  T  + +       RL V +++A +P  I G + S          R +
Sbjct: 68  YRVRIATVLTGMFTDRKAQ-------RLVVNLIIAFLPAAILGFLFS----------RRI 110

Query: 138 SVIGWSCIAMAILLAIAELVC-----RHR----------RTVDQMRLSDALIVGIAQVGA 182
             + ++ +++AI   +  L+      R++           TVD M   DAL VGIAQ  A
Sbjct: 111 KEVLFNPVSVAIAFIVGGLIILWVERRNKDRMSMASARVETVDDMTPLDALKVGIAQAFA 170

Query: 183 LIPGVSRSGSTLTAALFLNFKREEAARFSFLLGLPAIALAGL----KELAVLLHAHIPLH 238
           LIPG SRSG+T+   +     R+ A  FSF L +P +  A +    KE A+L  A +PL 
Sbjct: 171 LIPGTSRSGATIIGGMMFGLSRKAATEFSFFLAIPTLFAATIYSLYKERALLSAADVPLF 230

Query: 239 AWSLLLFGLLVASVSAFCAIWGLMKFLERFSTWPFIVYRAALGVFLLVAVSKG 291
                  G + A VSAF  +  L++++       F  YR   G+ +LV    G
Sbjct: 231 T-----VGTVAAFVSAFLCVRWLLRYISSHDFTIFAWYRIIFGIIVLVTAYTG 278


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 792,086
Number of extensions: 27934
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)