BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0439.p (200 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 194 6e-51 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 191 5e-50 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 190 8e-50 gi|300310055|ref|YP_003774147.1| methyl-accepting chemotaxis tra... 189 1e-49 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 187 4e-49 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 194 bits (492), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 102/164 (62%), Positives = 127/164 (77%) Query: 6 LALILGSIVTVWLVTSITRPLNTAVQIAQTVAAGDLRSEVIVSGKDETAQLLQALKDMND 65 +AL+L ++ WL +ITRPL AVQ+A+ VA+GDL + + V +DET LL ALKDMN+ Sbjct: 201 IALMLAVLLAWWLANNITRPLALAVQLARRVASGDLTARIEVRSRDETGALLGALKDMNE 260 Query: 66 NLVRIVSEVRSGTDTIATASTEIATGNQDLSSRTEQQAGSLEETAASMEEITATVQKNAE 125 +LVRIVS VR GT+ IATAS+EIATGN DLSSRTEQQA SLEETA+SMEE+T+TVQ+N Sbjct: 261 SLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASSLEETASSMEELTSTVQQNTA 320 Query: 126 NTQQANKLAADASGVAVKGGEMVAAVVDTMSAIEQSSHKIVDII 169 N ++AN++A AS +A GG +VA VVDTM I SS KIVDII Sbjct: 321 NAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKIVDII 364 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 191 bits (484), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 101/167 (60%), Positives = 128/167 (76%), Gaps = 4/167 (2%) Query: 4 IVLALILGSIVTVWLVTSITRPLNTAVQIAQTVAAGDLRSEVIVSGKDETAQLLQALKDM 63 +VLA+ L + W+ + RPL AV IA+ VAAGDL +++ + +DET QLL+AL+ M Sbjct: 201 VVLAMAL----SWWIARLVARPLANAVDIARQVAAGDLTADIPTAHRDETGQLLEALRQM 256 Query: 64 NDNLVRIVSEVRSGTDTIATASTEIATGNQDLSSRTEQQAGSLEETAASMEEITATVQKN 123 N NL+ IV EVR GTDTI TAS EIATGN DLSSRTEQQAG+LEETA++MEE+T+TV++N Sbjct: 257 NGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALEETASAMEELTSTVRQN 316 Query: 124 AENTQQANKLAADASGVAVKGGEMVAAVVDTMSAIEQSSHKIVDIIG 170 ++N +QAN+LA +AS VA GG +V VV TMSAI SS KIVDIIG Sbjct: 317 SDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVDIIG 363 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 190 bits (482), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 96/169 (56%), Positives = 132/169 (78%), Gaps = 1/169 (0%) Query: 6 LALILGSIVTVWLVT-SITRPLNTAVQIAQTVAAGDLRSEVIVSGKDETAQLLQALKDMN 64 +A +L +I+ +L+ SI +PL AV++A+ VAAGDL + + +DET QL+QAL+ MN Sbjct: 200 MAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHSRDETGQLMQALRKMN 259 Query: 65 DNLVRIVSEVRSGTDTIATASTEIATGNQDLSSRTEQQAGSLEETAASMEEITATVQKNA 124 DNL+ IVS VR GT++I TAS EIA+GN DLS+RTEQQAGSLEETA++MEE+T+TV++NA Sbjct: 260 DNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQNA 319 Query: 125 ENTQQANKLAADASGVAVKGGEMVAAVVDTMSAIEQSSHKIVDIIGTTN 173 +N +QAN++A AS +A++GG++V VV TM I QSS KIVDIIG + Sbjct: 320 DNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVID 368 >gi|300310055|ref|YP_003774147.1| methyl-accepting chemotaxis transducer transmembrane protein I [Herbaspirillum seropedicae SmR1] Length = 547 Score = 189 bits (481), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 98/154 (63%), Positives = 123/154 (79%), Gaps = 1/154 (0%) Query: 17 WLVT-SITRPLNTAVQIAQTVAAGDLRSEVIVSGKDETAQLLQALKDMNDNLVRIVSEVR 75 WL+T SI+RPL AV +AQ+V +GDL S + V+ KDE QL+ ALK MND+LV IV EVR Sbjct: 210 WLLTRSISRPLAQAVSVAQSVQSGDLGSRIEVTSKDELGQLMSALKGMNDSLVNIVGEVR 269 Query: 76 SGTDTIATASTEIATGNQDLSSRTEQQAGSLEETAASMEEITATVQKNAENTQQANKLAA 135 GTDTIA AS EI GN DLS+RTEQQAGSL+ETA++ME++TATV++NA+N ++AN+LA Sbjct: 270 QGTDTIAVASDEIKQGNMDLSNRTEQQAGSLQETASAMEQLTATVKQNADNAREANRLAD 329 Query: 136 DASGVAVKGGEMVAAVVDTMSAIEQSSHKIVDII 169 +AS VA +GG V VVDTM++I SSHKIVDII Sbjct: 330 NASQVAARGGAAVGRVVDTMNSISASSHKIVDII 363 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 187 bits (476), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 108/177 (61%), Positives = 134/177 (75%), Gaps = 7/177 (3%) Query: 3 SIVLAL-----ILGSIVTVWLVT-SITRPLNTAVQIAQTVAAGDLRSEVIVSGKDETAQL 56 S++LAL +LG+ + WL+T SITRPLN AV IA+TVAAGDL S + S +DET +L Sbjct: 188 SMLLALGAIEIVLGAALA-WLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRDETGKL 246 Query: 57 LQALKDMNDNLVRIVSEVRSGTDTIATASTEIATGNQDLSSRTEQQAGSLEETAASMEEI 116 L ALK MN NL+ IV VR GT+TI TAS EIATGN DLS+RTE QAGSLEETA++ME++ Sbjct: 247 LAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETASAMEQL 306 Query: 117 TATVQKNAENTQQANKLAADASGVAVKGGEMVAAVVDTMSAIEQSSHKIVDIIGTTN 173 T+TV++NA+N +QAN+LAA AS VA +GG +V VV TM AI SS KI DIIG + Sbjct: 307 TSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGVID 363 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.309 0.120 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 498,265 Number of extensions: 16683 Number of successful extensions: 366 Number of sequences better than 1.0e-08: 65 Number of HSP's gapped: 327 Number of HSP's successfully gapped: 65 Length of query: 200 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 119 Effective length of database: 1,236,335 Effective search space: 147123865 Effective search space used: 147123865 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 128 (53.9 bits)