BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0437.p (525 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 388 e-109 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 376 e-105 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 365 e-102 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 360 e-100 gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis pro... 354 8e-99 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 388 bits (996), Expect = e-109, Method: Compositional matrix adjust. Identities = 269/527 (51%), Positives = 341/527 (64%), Gaps = 23/527 (4%) Query: 3 LTNLRIGTRLGL-LAALLLLATIFVGVRGWMTLNESFEQNTQAMQKAGTIEKAIDSARSA 61 + NL+IG RL + ALL+L + V + W S T M + A+ R A Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRL--GSIGDATDDMTRI-----ALKKERDA 53 Query: 62 QVQFKIQVQE--WKNTLLRGKDDATFNKYRQAFIDEGKATQINLDKLTTLLPALGISIDK 119 VQ+ ++E + + DD F Y Q ID A + +L + A I+ + Sbjct: 54 -VQWHAAIKENGVRTFAVMKSDDDAFQAYFQKQID---AQSARISQLQKEVEA-AITDAE 108 Query: 120 LKQAQKAHADLGAHYLAALQKEYKPEDRDSVARVDEAVKGADRLPTQMIDDIVAEVRKSA 179 K+ L A Y A Q + + AR E D +M+DD V + A Sbjct: 109 EKRLFDEVGKLRAAYRATRQSIFDVKTAGDDARAREMT---DTTLVKMMDDYADGVLRYA 165 Query: 180 DKFREEIALDAAA---DYREARLTLVVSIVLALILGSIVTVWLVT-SITRPLNTAVQIAQ 235 D ++ I AAA DYR R L+ + ++LG+ + WL+T SITRPLN AV IA+ Sbjct: 166 DFQKQVIDQTAAAINRDYRSGRSMLLALGAIEIVLGAALA-WLLTRSITRPLNQAVTIAE 224 Query: 236 TVAAGDLRSEVIVSGKDETAQLLQALKDMNDNLVRIVSEVRSGTDTIATASTEIATGNQD 295 TVAAGDL S + S +DET +LL ALK MN NL+ IV VR GT+TI TAS EIATGN D Sbjct: 225 TVAAGDLTSRIDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLD 284 Query: 296 LSSRTEQQAGSLEETAASMEEITATVQKNAENTQQANKLAADASGVAVKGGEMVAAVVDT 355 LS+RTE QAGSLEETA++ME++T+TV++NA+N +QAN+LAA AS VA +GG +V VV T Sbjct: 285 LSARTEAQAGSLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVAT 344 Query: 356 MSAIEQSSHKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRS 415 M AI SS KI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRS Sbjct: 345 MGAIHASSQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 404 Query: 416 ATAAKEIKELIGDSVTKINSGTSLVGNAGQTMQEIVGAVAQVAGIMDQITRANREQSAGI 475 A+AAKEIK+LI DSV K++ G+ LV AG TMQE+V +VA+V ++ +IT A++EQS GI Sbjct: 405 ASAAKEIKQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGI 464 Query: 476 DEVNRAVVQMDMVTQQNAALVEQAAAAAESLQDQAAGLARTVSVFKL 522 ++VN A+ +D TQQNAALVEQAAAAA S+QDQAA L VSVF+L Sbjct: 465 EQVNLAITHIDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRL 511 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 376 bits (965), Expect = e-105, Method: Compositional matrix adjust. Identities = 260/540 (48%), Positives = 346/540 (64%), Gaps = 42/540 (7%) Query: 1 MKLTNLRIGTRL----GLLAALLLLATIFVGVRGWMTLNESFEQNTQAMQKAGTIEKAID 56 MKL +L+IGTRL GL+AA+L++ + V + L + E N + + Sbjct: 1 MKLADLKIGTRLYMGFGLVAAILVI-LVSVAYTNFARLGAANELNVHTYE--------VR 51 Query: 57 SARSAQVQFKIQVQEWKNTLLRGKDDATFNKYRQAFIDEGKATQINLDKLTTLLPALGIS 116 + A + I ++ + DA+ Y A L+K TL + Sbjct: 52 AQLRAMAESLINIETGQRGFSLSGIDASLEPYHLGMTTFKTA----LEKTRTL------T 101 Query: 117 IDKLKQAQKAH--ADLGAHYLAA-------LQKEYKPEDRDSVARV---DEAVKGADRLP 164 D Q Q+ +D +L + L++ + E R+ +A V ++A KG ++ Sbjct: 102 SDNTLQQQRLQELSDSEQRWLKSAIDPAIELRRAVR-EGREQMAAVVAFEQAGKGKSQMD 160 Query: 165 TQ--MIDDIVAEVRKSADKFREEIALDAAADYREARLTLVVSIVLALILGSIVTVWLVTS 222 + ++DD+ ++ E A +AAA TL+ +AL+L ++ WL + Sbjct: 161 SMRVLLDDL----DRTESALLGERAEEAAALRSVTSTTLIGGGAIALMLAVLLAWWLANN 216 Query: 223 ITRPLNTAVQIAQTVAAGDLRSEVIVSGKDETAQLLQALKDMNDNLVRIVSEVRSGTDTI 282 ITRPL AVQ+A+ VA+GDL + + V +DET LL ALKDMN++LVRIVS VR GT+ I Sbjct: 217 ITRPLALAVQLARRVASGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMI 276 Query: 283 ATASTEIATGNQDLSSRTEQQAGSLEETAASMEEITATVQKNAENTQQANKLAADASGVA 342 ATAS+EIATGN DLSSRTEQQA SLEETA+SMEE+T+TVQ+N N ++AN++A AS +A Sbjct: 277 ATASSEIATGNLDLSSRTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIA 336 Query: 343 VKGGEMVAAVVDTMSAIEQSSHKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFA 402 GG +VA VVDTM I SS KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFA Sbjct: 337 SSGGGVVARVVDTMEEINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 396 Query: 403 VVASEVRTLAQRSATAAKEIKELIGDSVTKINSGTSLVGNAGQTMQEIVGAVAQVAGIMD 462 VVASEVR+LAQRSA AAKEIK LI DSV K+ SG+ LV AG TM+EIV +V +V +++ Sbjct: 397 VVASEVRSLAQRSAAAAKEIKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMIN 456 Query: 463 QITRANREQSAGIDEVNRAVVQMDMVTQQNAALVEQAAAAAESLQDQAAGLARTVSVFKL 522 +I+ A EQ +GI++V++AV QMD VTQQNAALVEQAAAA++SLQ+QA LA+ VSVF+L Sbjct: 457 EISAAGEEQRSGIEQVSQAVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRL 516 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 365 bits (936), Expect = e-102, Method: Compositional matrix adjust. Identities = 213/336 (63%), Positives = 265/336 (78%), Gaps = 2/336 (0%) Query: 189 DAAAD--YREARLTLVVSIVLALILGSIVTVWLVTSITRPLNTAVQIAQTVAAGDLRSEV 246 DA AD Y +A + ++ + ++L ++ W+ + RPL AV IA+ VAAGDL +++ Sbjct: 179 DADADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADI 238 Query: 247 IVSGKDETAQLLQALKDMNDNLVRIVSEVRSGTDTIATASTEIATGNQDLSSRTEQQAGS 306 + +DET QLL+AL+ MN NL+ IV EVR GTDTI TAS EIATGN DLSSRTEQQAG+ Sbjct: 239 PTAHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGA 298 Query: 307 LEETAASMEEITATVQKNAENTQQANKLAADASGVAVKGGEMVAAVVDTMSAIEQSSHKI 366 LEETA++MEE+T+TV++N++N +QAN+LA +AS VA GG +V VV TMSAI SS KI Sbjct: 299 LEETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKI 358 Query: 367 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAKEIKELI 426 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA AA EIK LI Sbjct: 359 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALI 418 Query: 427 GDSVTKINSGTSLVGNAGQTMQEIVGAVAQVAGIMDQITRANREQSAGIDEVNRAVVQMD 486 DSV K+++G+ LV AGQTM E+V +V +V+ I+ +IT A EQ+ GI+++N AVVQMD Sbjct: 419 DDSVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMD 478 Query: 487 MVTQQNAALVEQAAAAAESLQDQAAGLARTVSVFKL 522 TQQNAALVEQAAAAA++LQ+QA L+ TVSVF+L Sbjct: 479 ENTQQNAALVEQAAAAAKALQEQAGRLSETVSVFRL 514 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 360 bits (924), Expect = e-100, Method: Compositional matrix adjust. Identities = 228/386 (59%), Positives = 286/386 (74%), Gaps = 6/386 (1%) Query: 137 ALQKEYKPEDRDSVARVDEAVKGADRLPTQMIDDIVAEVRKSADKFREEIALDAAADYRE 196 AL ++ K E+ ++ R E+ K A R Q ID + A K AD ++ A A Y + Sbjct: 135 ALSRQGKDEEARNLQR-GESTK-AYRTSLQQIDKLAAVNDKGADISNKQ----ADAIYAQ 188 Query: 197 ARLTLVVSIVLALILGSIVTVWLVTSITRPLNTAVQIAQTVAAGDLRSEVIVSGKDETAQ 256 ARL ++V++ + L ++ VW+ I RPL AV +AQ VA GDL + + +GKDET Q Sbjct: 189 ARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEPAGKDETGQ 248 Query: 257 LLQALKDMNDNLVRIVSEVRSGTDTIATASTEIATGNQDLSSRTEQQAGSLEETAASMEE 316 LL ALK MND+LV IV +VR GT TI TASTEIA+GN DLSSRTE+QA SLEETA++MEE Sbjct: 249 LLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLEETASAMEE 308 Query: 317 ITATVQKNAENTQQANKLAADASGVAVKGGEMVAAVVDTMSAIEQSSHKIVDIIGVIDGI 376 +T+TV++NA+N +QAN+LA AS VA +GG +V VVDTM +I SS KI DIIGVIDGI Sbjct: 309 LTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIADIIGVIDGI 368 Query: 377 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAKEIKELIGDSVTKINSG 436 AFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIKELI SV +++ G Sbjct: 369 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEGSVAQVDMG 428 Query: 437 TSLVGNAGQTMQEIVGAVAQVAGIMDQITRANREQSAGIDEVNRAVVQMDMVTQQNAALV 496 + LV AG TM E+V +V +V I+ +I+ A++EQS GI++VN A+ QMD VTQQNAALV Sbjct: 429 SKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEVTQQNAALV 488 Query: 497 EQAAAAAESLQDQAAGLARTVSVFKL 522 E+AAAAA+SLQ+QA L +TV FKL Sbjct: 489 EEAAAAAQSLQEQAETLTQTVGFFKL 514 >gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 534 Score = 354 bits (909), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 210/309 (67%), Positives = 258/309 (83%), Gaps = 1/309 (0%) Query: 218 WLVT-SITRPLNTAVQIAQTVAAGDLRSEVIVSGKDETAQLLQALKDMNDNLVRIVSEVR 276 W++T SIT PL+ AV++A+TVAAGDL S + G+DET+ LL+ALK MND L+ IVS+VR Sbjct: 208 WMITRSITAPLDRAVRVAETVAAGDLTSAIDAHGRDETSMLLRALKKMNDRLLDIVSQVR 267 Query: 277 SGTDTIATASTEIATGNQDLSSRTEQQAGSLEETAASMEEITATVQKNAENTQQANKLAA 336 TDTIATAS+EIA GN DLSSRTE+QA SLEETA+SME++TATV++NA + QA++LA Sbjct: 268 VSTDTIATASSEIARGNLDLSSRTEEQAASLEETASSMEQLTATVKQNASHAGQASQLAG 327 Query: 337 DASGVAVKGGEMVAAVVDTMSAIEQSSHKIVDIIGVIDGIAFQTNILALNAAVEAARAGE 396 AS +A +GGE+V VV+TM AI+ SS KIVDIIGVIDGIAFQTNILALNAAVEAARAGE Sbjct: 328 SASDIARQGGEVVGHVVETMGAIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGE 387 Query: 397 QGRGFAVVASEVRTLAQRSATAAKEIKELIGDSVTKINSGTSLVGNAGQTMQEIVGAVAQ 456 QGRGFAVVA+EVR LAQRSATAA EIK LI DSV ++ +G+ LV AG+TM E+V +V + Sbjct: 388 QGRGFAVVAAEVRALAQRSATAAHEIKALIADSVARVGNGSKLVEQAGRTMHEVVQSVQR 447 Query: 457 VAGIMDQITRANREQSAGIDEVNRAVVQMDMVTQQNAALVEQAAAAAESLQDQAAGLART 516 V ++++I+ A +EQSAGI++VN A+VQMD VTQQNAALVEQAAAAA++LQDQAA LAR Sbjct: 448 VGEVVNEISSAGQEQSAGIEQVNLAIVQMDQVTQQNAALVEQAAAAAQALQDQAAQLARM 507 Query: 517 VSVFKLRSA 525 VS+FKL A Sbjct: 508 VSIFKLEDA 516 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.126 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,118,397 Number of extensions: 39646 Number of successful extensions: 526 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 271 Number of HSP's successfully gapped: 71 Length of query: 525 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 435 Effective length of database: 1,193,720 Effective search space: 519268200 Effective search space used: 519268200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)