BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0436.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309831|ref|YP_003773923.1| tRNA guanine-N(7)-methyltransfe...   402   e-113
gi|300309413|ref|YP_003773505.1| methyl transferase [Herbaspiril...    59   3e-10

>gi|300309831|ref|YP_003773923.1| tRNA
           guanine-N(7)-methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 252

 Score =  402 bits (1033), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 191/239 (79%), Positives = 209/239 (87%)

Query: 1   MSENKSGKPLFYDPTEHRIRSFVTRAGRLSGAQARAIEELGPQFLLPYAKETLDIDAAFG 60
           MSENKSGKPLFYDP+E RIRSFVTRAGR+S  Q RA+EELGP+FLLPY K  LD++AAFG
Sbjct: 14  MSENKSGKPLFYDPSERRIRSFVTRAGRVSVGQGRALEELGPRFLLPYDKAPLDLEAAFG 73

Query: 61  RSAPTVFEIGFGMGDTSAKIAADMPEKNFIGVEVHTPGVGSLLKQIGEQGLSNMRLIQHD 120
           R APT+ EIGFGMG+TSAKI+A MPEKNFIGVEVHTPGVGS LK IGE  L N+R+IQHD
Sbjct: 74  RKAPTILEIGFGMGETSAKISALMPEKNFIGVEVHTPGVGSYLKLIGEGHLENVRIIQHD 133

Query: 121 AVEVLTNMIAPGSLAGVHVFFPDPWHKARHNKRRLIQGPLVSLLASRLAPGGYLHCATDW 180
           AVEVLTNMIAP +LAGVHVFFPDPWHKARHNKRRLIQ PLV L++SRLAPGGYLHCATDW
Sbjct: 134 AVEVLTNMIAPDTLAGVHVFFPDPWHKARHNKRRLIQSPLVQLISSRLAPGGYLHCATDW 193

Query: 181 EEYAIQMLEVLGAEPALKNSTDAAEGYAPRPDYRPVTKFENRGLRLGHGVWDLVFIKQG 239
           EEYAIQML+VL AEP LKN+     GY PRP+YR  TKFENRGLRLGHGVWDLVF K+ 
Sbjct: 194 EEYAIQMLDVLSAEPTLKNTATDPSGYVPRPEYRDTTKFENRGLRLGHGVWDLVFEKRA 252


>gi|300309413|ref|YP_003773505.1| methyl transferase [Herbaspirillum
           seropedicae SmR1]
          Length = 232

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 11/170 (6%)

Query: 63  APTVFEIGFGMGDTSAKIAADMPEKNFIGVEVHTPGVGSLLKQIGEQGLSNMRLIQHDAV 122
           AP + + G G+G ++  +A+  P+   IG++     +       G +  +N+  ++ D V
Sbjct: 61  APLILDTGCGVGLSTLHLASQHPDHFVIGIDQSADRLARHTHWDGPEP-ANLCFVRADLV 119

Query: 123 EVLTNMIAPGSLAGVH-VFFPDPWHKARHNKRRLIQGPLVSLLASRLAPGGYLHCATDWE 181
           +     +  G     H + +P+PW K  H  RR  QG  V    + +A GG + C ++W 
Sbjct: 120 DYWRLALQAGVRPARHYLLYPNPWPKIGHLARRW-QGHAV--FPAIVALGGQIECRSNWR 176

Query: 182 EYAIQMLEVLGAEPALKNSTDAAEGYAPRPDYRPVTKFENRGLRLGHGVW 231
            Y   + E   A   L      AE + P    RP+T FE + L  GH +W
Sbjct: 177 IY---VEEFAAALSQLSGQRIQAEAWRPE---RPITPFERKYLASGHALW 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 830,167
Number of extensions: 36100
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)