BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0418.p
         (508 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312883|ref|YP_003776975.1| hypothetical protein Hsero_3589...   158   9e-40

>gi|300312883|ref|YP_003776975.1| hypothetical protein Hsero_3589
           [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score =  158 bits (400), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 105/123 (85%)

Query: 1   VIDVALLGIIRRWHLRDQISLREIAKRLGISRNTVRRYLRSETVEPAYADRRSASALDVY 60
           +IDVALLGIIRRW++RD+IS+REIA+RL ISRNTVRR +R+E +EP+Y  R+S+S+LD +
Sbjct: 1   MIDVALLGIIRRWYIRDRISIREIARRLDISRNTVRRSIRTEAIEPSYPSRKSSSSLDEF 60

Query: 61  TFKLSAWLKTESTKSRKQKRSLKQMHADLCVLGFEGSYDRVAAFARQWKVDQLDRVNAAS 120
             +L+AWL  E+ KSRKQ+R+LKQM  DL  LG++GSYDRVAAF R+WKV Q++RVN+AS
Sbjct: 61  APQLTAWLSAEAVKSRKQRRTLKQMFLDLKELGYKGSYDRVAAFGRRWKVGQMERVNSAS 120

Query: 121 KGT 123
           K T
Sbjct: 121 KST 123


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,633,527
Number of extensions: 68035
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 419
Effective length of database: 1,198,455
Effective search space: 502152645
Effective search space used: 502152645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)