BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0414.p
         (208 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309848|ref|YP_003773940.1| transmembrane protein [Herbaspi...   313   7e-87

>gi|300309848|ref|YP_003773940.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score =  313 bits (802), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 158/208 (75%), Positives = 188/208 (90%)

Query: 1   MLLYTIYLIAISAEAMSGAIMGIRREMDLFGICLIGTVAALGGGTVRDILIGHYPLGWVA 60
           MLL+TIYLIAI AEA+SGA+MGIR++MD+FG+CLIGTVAALGGGT+RDILIGHYPLGWVA
Sbjct: 1   MLLHTIYLIAICAEAISGALMGIRKDMDIFGVCLIGTVAALGGGTMRDILIGHYPLGWVA 60

Query: 61  HPEYLAFTICAAVVTAVAARKMHHFKSAFLVVDALGLVAFTIIGCDIARGFAHFNPFVVV 120
           HPEYLAFTICAAVV AVAAR +HHFKSAFLVVDALGLVAFT+IGCDIARGFA F+P +VV
Sbjct: 61  HPEYLAFTICAAVVAAVAARALHHFKSAFLVVDALGLVAFTVIGCDIARGFADFHPAIVV 120

Query: 121 IFGMITGVFGGLLRDVLCNEIPLVLQREVYASVSLVTGGLYVGMLWLNIDASVSTLTALG 180
           + GM+TGVFGGLLRDVLCNEIPLVL+RE+YASVSL+TG  YVG+L L +D  ++T+++L 
Sbjct: 121 MLGMVTGVFGGLLRDVLCNEIPLVLRREIYASVSLLTGATYVGVLHLQVDPRIATMSSLL 180

Query: 181 VGFLFRLLAIRYHWTLPKFNDKDIRGFE 208
           +GF  RLLAIR+HW LP+ +   +RGF+
Sbjct: 181 LGFAVRLLAIRFHWELPRMDKDRVRGFD 208


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.147    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 645,413
Number of extensions: 26378
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,236,335
Effective search space: 157014545
Effective search space used: 157014545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)