BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0412.p (324 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312848|ref|YP_003776940.1| NADPH:quinone oxidoreductase [H... 184 6e-48 gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase [H... 122 5e-29 gi|300310813|ref|YP_003774905.1| NADPH:quinone oxidoreductase [H... 82 5e-17 gi|300312794|ref|YP_003776886.1| NADPH:quinone oxidoreductase [H... 62 7e-11 >gi|300312848|ref|YP_003776940.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 324 Score = 184 bits (468), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 121/319 (37%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 17 IELTAYGDAANFELVTRTLPPLATGAVRVRQHVAGVNYVDVYQRVGRYPLPLPAVLGVEG 76 I ++ G E V + G VR+R G+N++D Y R G YP PLPA LG E Sbjct: 5 IRMSKTGGPEVMEYVDVEVGEPGAGEVRIRHAAVGLNFIDCYFRAGLYPQPLPAGLGQEA 64 Query: 77 SGVIVEVGGGVDASRVGQRVAWSA-TNGSYAKLVDVAAERAIVLPDEVSFEQGGAGLLRS 135 +G I VG GV +VG RVA++ NG+YA+ + A+ + LPD +SF+ A +L+ Sbjct: 65 AGTIEAVGAGVSGFKVGDRVAYAGRPNGAYAEERVMPADILVKLPDAISFDTAAAMMLQG 124 Query: 136 MTAYLLLNHYGRLQSGQTVLVHAAAGGXG-----------AHVIGTVSSDEKAALAQSRG 184 MT LL +Q G T+L HAAAGG G ++IGTVSSDEKAALA G Sbjct: 125 MTVQYLLRQTYAVQPGDTILFHAAAGGIGLIACQWARALGVNLIGTVSSDEKAALALQHG 184 Query: 185 LDQAINYREQDFVAAVREYTGGLGADIVVDGIGGAHFLRSIEATRSGGMAVTIGSISGEG 244 INY+ ++FV V+E TGG G +V D IG FL S++ R GM V+ G+ SG Sbjct: 185 AAHVINYKTENFVERVKELTGGRGVQVVYDSIGKDTFLGSLDCLRPRGMMVSFGNASGPV 244 Query: 245 APAEALAAAQLRGVLMERPSILSFSKDLPQYRLATAAAMMQLQAG--LAIDVAGRLPLAQ 302 AP A + + RPS+ +++ + ATA + + G ++I++ R L Sbjct: 245 APFGVSELASRGSLFLTRPSLGNYTSTRAELD-ATAGDLFDMVLGNKISIEINQRYALKD 303 Query: 303 VAEAHRLLETGAAQGALLL 321 VA+AH LE G+ +L Sbjct: 304 VAQAHADLEGRKTTGSTIL 322 >gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 325 Score = 122 bits (305), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 98/330 (29%), Positives = 154/330 (46%), Gaps = 31/330 (9%) Query: 17 IELTAYGDAANFELVTRTLPPLATGAVRVRQHVAGVNYVDVYQRVGRYPLPLPA--VLGV 74 IE+ +G + R +P L G V ++ H AGVN DV+QR G YP+P A + G+ Sbjct: 4 IEIKEFGGPEVLQACERPVPELKAGEVLIKVHAAGVNRPDVFQRTGNYPVPPGASDLPGL 63 Query: 75 EGSGVIVEVGGGVDASRVGQRVAWSATNGSYAKLVDVAAERAIVLPDEVSFEQGGAGLLR 134 E +G IV G ++G V G YA+ + + +P +S + A Sbjct: 64 EVAGEIVAGDLGDSGFKLGDLVCALVQGGGYAEFCAAPLAQCLPVPKGLSALEAAALPEN 123 Query: 135 SMTAYLLLNHYGRLQSGQTVLVHAAAGGXGA-----------HVIGTVSSDEKAALAQSR 183 T + + G+L +T+LV + G G V T S EK + Sbjct: 124 YFTVWSNVFDRGQLSGEETLLVQGGSSGIGVTAIQIARALGHRVFATAGSAEKCRACEEL 183 Query: 184 GLDQAINYREQDFVAAVREYTGGLGADIVVDGIGGAHFLRSIEATRSGGMAVTIGSISGE 243 G ++AINY+ +DF A V+E TGG G D+++D +GG + R I+A G V I + G Sbjct: 184 GAERAINYKTEDFEAVVKELTGGRGVDVILDMVGGDYLPREIKALADDGRLVFIAQLGG- 242 Query: 244 GAPAEALAAAQLR-GVLMERPSILSFSKDLPQ---YRLATAAAMMQ-----LQAG-LAID 293 A QL G +M R ++ S P+ ++ A AA + + ++AG + Sbjct: 243 -------AKGQLDMGQVMRRRLTITGSTLRPRPVAFKAAIAAKLREHVWPLIEAGKIRPV 295 Query: 294 VAGRLPLAQVAEAHRLLETGAAQGALLLEM 323 + R PL Q A+AH ++E G ++LE+ Sbjct: 296 IHHRFPLEQAAQAHAMMEGSTHIGKIMLEL 325 >gi|300310813|ref|YP_003774905.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 309 Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 148/323 (45%), Gaps = 44/323 (13%) Query: 22 YGDAANFELVTRTLPPLATGAVRVRQHVAGVNYVDVYQRVGRYP----LPLPAVLGVEGS 77 YG + L PL G VRV AGV VD R GR L LP V G +G+ Sbjct: 9 YGPPSVLHLCDLDEQPLPPGHVRVAMQAAGVAPVDTKLRAGRLQHLVALDLPKVPGRDGA 68 Query: 78 GVIVEVGGGVDASRVGQRVA----WSATNGSYAKLVDVAAERAIVLPDEVSFEQGGAGLL 133 GVI +G GV +VG+ V + + A+LV + E+ + PD +S +Q A L Sbjct: 69 GVITALGEGVHTLQVGEAVCVMPSMAGRGTTLAELV-LPQEQVVRKPDVLSMQQAAALLQ 127 Query: 134 RSMTAYLLLNHYGRLQSGQTVLVHAAAGGXG-------AHVIGTVSSDEKAALAQ---SR 183 + +A++ L + +G V +HA +G G AH+ V++ +++ + + Sbjct: 128 PACSAWIALMQTAPIAAGMKVFIHAGSGAVGSLMVQLAAHLGAEVTASCRSSNVEYVAAL 187 Query: 184 GLDQAINYREQDFVAAVREYTGGLGADIVVDGIGGAHFLRSIEATRSGGMAVTI--GSIS 241 G + + Y ++D + VR+ D+V+D +GGA +S R GG V + I Sbjct: 188 GASRVLAY-DRDELGRVRDQ------DVVIDLVGGAAHDQSYRMLRRGGQLVWLVAAPIR 240 Query: 242 GEGAPAEALAAAQLRGVLMERPSILSFSKDLPQYRLATAAAMMQLQAGLAIDVAGRLPLA 301 G E + R +++E SIL L Q + A V+G LP+ Sbjct: 241 ERG---EEFGVSVRRALIVEDQSILQQVAALAQQGVWRPA------------VSGVLPMQ 285 Query: 302 QVAEAHRLLETG-AAQGALLLEM 323 ++A AH+ +E G +G L+L++ Sbjct: 286 EIARAHQRIEAGEVTRGRLVLDI 308 >gi|300312794|ref|YP_003776886.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 342 Score = 61.6 bits (148), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 76/280 (27%), Positives = 110/280 (39%), Gaps = 54/280 (19%) Query: 10 TSTATQLIELTAYGDAANFELVTRTLPPLATGAVRVRQHVAGVNYVDVYQRVGRYPLP-- 67 T + I+ A+G +P L G V VR H G+N D Y R G LP Sbjct: 2 TPATMKAIQQHAFGGPEVLRYEDAPVPELQPGEVLVRVHAVGLNPPDWYLREGYKMLPPE 61 Query: 68 ------LPAVLGVEGSGVIVEVGGGVDASRVGQRV--------AWSATNGSYAKLVDVAA 113 P +LG + SGV+ V V VG V + + +YA+ V VAA Sbjct: 62 WQPTVAFPLILGTDISGVVEAVADDVKDFAVGDEVYSMVRFPSGLAGGSRAYAQYVSVAA 121 Query: 114 ERAIVLPDEVSFEQGGAGLLRSMTAYLLLNHYGR-----LQ---------SGQTVLVHAA 159 + P +S Q A + +TA+ + G LQ +TV+V+ A Sbjct: 122 SEIALKPQRISHAQAAAAPMSLLTAWQFMIELGHDIQNPLQPHRHEPVPLKDKTVVVNGA 181 Query: 160 AGG-----------XGAHVIGTVSSDEKAALAQSRGLDQAINYRE---QDFVAAVREYTG 205 AGG GA VI S +A L + G D+ I+Y +D ++ V Sbjct: 182 AGGVGHFALQLAKWKGARVIAIGSGGHEAFL-RDLGADEFIDYTRSAAEDVLSDV----- 235 Query: 206 GLGADIVVDGIGGAHFLRSIEATRSGGMAVTIGSISGEGA 245 D+V+D +GG R + + GG I + GA Sbjct: 236 ----DLVIDAVGGPASGRFLRTLKRGGALFPIFPLGFSGA 271 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 806,690 Number of extensions: 29056 Number of successful extensions: 164 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 4 Length of query: 324 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 239 Effective length of database: 1,217,395 Effective search space: 290957405 Effective search space used: 290957405 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)