BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0409.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310801|ref|YP_003774893.1| aldose 1-epimerase [Herbaspiril...    56   1e-09

>gi|300310801|ref|YP_003774893.1| aldose 1-epimerase [Herbaspirillum
           seropedicae SmR1]
          Length = 312

 Score = 56.2 bits (134), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 16/120 (13%)

Query: 24  VISLYGAQLLSWQSADGREHLYCTPEPSLKAGASIRGGVPVCFPQF-------------- 69
           +I+  GAQ+L +Q       ++ + E + +AG S+RGG+PVC+P F              
Sbjct: 37  LIAEQGAQVLRYQEHGQEPLIWMSEEAAFEAGNSVRGGIPVCWPWFGDLMRNPPQVQSLH 96

Query: 70  SGRGALPKHGLVRNLVWQVDGDILSGADQDVACARLSLSDSDATRALWPHSFALQLQIEL 129
           SG G LP HGLVR + W +  + + G    +  A    S+S A R L P    L+L+I L
Sbjct: 97  SG-GRLPAHGLVRGIPWLLMENAIEGDSVRLVLAIPPTSESPALRHL-PPGIELRLEILL 154


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 622,132
Number of extensions: 26742
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)