BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0408.p
         (425 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase ...   163   3e-41
gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase [H...    58   2e-09

>gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  163 bits (412), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 166/362 (45%), Gaps = 30/362 (8%)

Query: 49  QAAHSPAPLPLVTKQVFTLPSYTTVGGQEIRNVRVGYETYGKLNEVGDNAIFVAHFYSGT 108
           Q  H   PLPL              GG  + +  + YETYG LN    NA+ V H  + +
Sbjct: 9   QVMHFAEPLPLQ-------------GGSALADYSLTYETYGTLNADKSNAVLVCHALNAS 55

Query: 109 SHAAGKYKDSDAAPGYWDSLIGPGKAIDTDKYFVISADTLVNINTKDPMVTTTGPASINA 168
            H AG Y D     G+WD+++GPGK++DTD++FVI       +N       +TGP   N 
Sbjct: 56  HHVAGVYADDPDNVGWWDNMVGPGKSLDTDRFFVIG------VNNLGSCFGSTGPMHANP 109

Query: 169 ATGKPYGMSFPVVAMRDSVRVHKQLLDKLGVRQLVAAVGASGGSIQAMEWAALYPDFVKR 228
           ATGKPYG  FPVV + D V    +L D+LG+    A +G S G +QA+ W+ +YPD ++ 
Sbjct: 110 ATGKPYGADFPVVTVEDWVNAQARLADRLGITCFAAVMGGSLGGMQALAWSMMYPDRLRH 169

Query: 229 VVHVIGPGFDISPYVISLLDVWSLPVRLDPKWRQGDYYGSG-DPDDGVAAALKVVTVQTR 287
            + VI     +S   I+  DV    +  DP++  GD+Y  G  P +G+  A  V  +   
Sbjct: 170 CL-VIASTPKLSAQNIAFNDVARQAILTDPQYHGGDFYAHGVVPKNGLRVARMVGHITYL 228

Query: 288 HWDWAQAAFGYAPADAAKPPGAAMGNQFKIEAVLEAGARARARVADGNSIIYMSKANQLY 347
             D     FG          G   G  F+IE+ L       +   D N+ + ++KA   +
Sbjct: 229 SDDDMAEKFGRDLRSGQYQFG--YGVDFEIESYLRYQGDKFSTYFDANTYLLITKALDYF 286

Query: 348 ----HLSDDEVKGI---KAKILFIPSSTDLVFPLKLSSEALQRFKKLGGRGTLYLLQGPG 400
                   D  K +   KAK L +  +TD  F  + S E +Q       R +   +  P 
Sbjct: 287 DPAREFGGDLAKALACTKAKFLLVSFTTDWRFSPERSREMVQALVANKRRVSYAEIDAPH 346

Query: 401 GH 402
           GH
Sbjct: 347 GH 348


>gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 124/323 (38%), Gaps = 48/323 (14%)

Query: 48  VQAAHSPAPLPLVTKQVFTLPSYTTVGGQEIRNVRVGYETYGKLNEVGDNAIFVAHFYSG 107
            QAA  P P+    +  +  P +    GQ + N+R+ Y T G   +  + A+ V H   G
Sbjct: 27  TQAADPPRPV----EGDWVAPRFQFHTGQTLENLRLHYVTLG---DRANPAVLVLH---G 76

Query: 108 TSHAAGKYKDSDAAPGYWDSLIGPGKAIDTDKYFVISADTLVNINTKDPMVTTTGPASIN 167
           T  +A      D    +   L GPG+ +D  KYF+I  D +    +  P         + 
Sbjct: 77  TYQSAQAMLSKD----FGGQLFGPGQPLDASKYFIIIPDGIGVGKSSKP------SDGLR 126

Query: 168 AATGKPYGMSFPVVAMRDSVRV-HKQLLDKLGVRQLVAAVGASGGSIQAMEWAALYPDFV 226
           AA        FP     D V   ++ L + +G+  L   +G S G +Q   W   YP F 
Sbjct: 127 AA--------FPQYNYADMVLAQYRMLTEGMGITHLRLIIGNSMGGMQTWIWGGTYPGFA 178

Query: 227 KRVVHVIGPGFDISPYVISLLDVWSLPVRLDPKWRQGDYYGSGDPDDGVAAALKVVTVQT 286
             +V +     +++     +  +    ++ DP W  G+Y                 T Q 
Sbjct: 179 DGLVPMASQPTEMASRNWMMRRMLVESIKQDPAWNNGNY-----------------TTQP 221

Query: 287 RHWDWAQAAFGYAPADAAKPPGAAMGNQFKIEAVLEAGARARARVADGNSIIYMSKANQL 346
                A   F +A         A  G+  + + +++    A    AD N  IY   ++  
Sbjct: 222 PSLRLANNMFVFATNGGTLAYQAMAGSHAQADKLVDERLAAPV-TADANDFIYQWGSSAD 280

Query: 347 YHLSDDEVKGIKAKILFIPSSTD 369
           Y+ +    K IKA +L I S+ D
Sbjct: 281 YNAAPGLSK-IKAPVLAINSADD 302


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,132,834
Number of extensions: 42880
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 425
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 337
Effective length of database: 1,203,190
Effective search space: 405475030
Effective search space used: 405475030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)