BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0402.p
         (292 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311867|ref|YP_003775959.1| phenazine biosynthesis epimeras...    69   4e-13

>gi|300311867|ref|YP_003775959.1| phenazine biosynthesis epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 109/255 (42%), Gaps = 5/255 (1%)

Query: 6   QIVNAFIDGVAGGNPAGVVLDADALTTEQKLHIARQLGLSETAFVSASQSATVKLDFFTP 65
           +++N F +   GGNP  V  DA  L     L +A Q  LSET F+  S  A  ++  FT 
Sbjct: 8   RLLNVFAESTFGGNPLCVFEDARGLDDATMLALALQFNLSETTFILPSTVADARVRIFTT 67

Query: 66  TRQIPHCGHATIATFSLLRKLGIVGEGNFSKESIDGNLDILIAGEMVFMEQRAPQYRVLD 125
             ++P  GH T+ +  ++R L   G+   + E   G + +   G++       P    + 
Sbjct: 68  GYEMPFAGHPTLGSAHVVRDLLGCGDA-LTLEFKAGVVPVQARGDIWTFTAPCPGGPRIT 126

Query: 126 AGTGLIARIAGSLGLAPGQLHADLAPTVVNTGNAFLIVALPDEQTVSGVRPDMALIEALS 185
                 A+ A  LGL    L  D  P  V+TG    +V L   + V   +PD + ++   
Sbjct: 127 PAALSRAQTAALLGLQESDLAGD--PVWVDTGADQFLVPLKTPEAVRRAQPDSSRLDQWP 184

Query: 186 -DELDVIGYYVYSDMTTVSGRHAGVRMFSPR-FGIPEESATGTAAGPLACYLHDHGGVKD 243
              L     Y+++      G+      F+ +  G+ E+  TG+A   L  +L  +G    
Sbjct: 185 VSSLGRKTAYLFAFDPAEPGQVLSRYFFTKQGGGVAEDPGTGSACANLGAWLLANGHPLP 244

Query: 244 CEIIIEQGYLMQPPS 258
               I+QG  ++ PS
Sbjct: 245 ARHAIDQGAAVERPS 259


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 990,233
Number of extensions: 44794
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 208
Effective length of database: 1,222,130
Effective search space: 254203040
Effective search space used: 254203040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)