BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0396.p
         (363 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313552|ref|YP_003777644.1| ABC transporter periplasmic/sur...   392   e-110
gi|300310744|ref|YP_003774836.1| ABC transporter periplasmic/sur...   196   2e-51

>gi|300313552|ref|YP_003777644.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 379

 Score =  392 bits (1008), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 181/331 (54%), Positives = 236/331 (71%), Gaps = 1/331 (0%)

Query: 34  LKIGFIYPGPVADIGWSFQHDLGRRMLEREFGTRIETVFVERVPESP-EAERVMRQLIDD 92
           LK+ F+Y GPV D GW+F HD GR+ +E +FG +++T FVE +PES  +AERV RQL  D
Sbjct: 48  LKVAFVYIGPVGDAGWTFAHDKGRKAVEEKFGDKVKTTFVENIPESAADAERVFRQLATD 107

Query: 93  GCKMIFATSFGFMNPVIKVAAEYPDVIFEHCSGYKSARNVGIYQTRFYEGAYLLGTIAGR 152
           G K+IF T+FG+M  ++KVA E+PDV FEH +G+K+A N+  Y  R YEGAYL G +AG+
Sbjct: 108 GNKLIFGTTFGYMEAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGK 167

Query: 153 MTKTNTLGYVAPIPIPEVIRNLDAFVLGARSVNPKVTAKVVWINSWYDPGLERDAAQTLV 212
           M+K+  LG VA +PIPEVIRN+D+F LGARSVNPK T  VVW+N W+DPG ER+AA TL+
Sbjct: 168 MSKSGKLGVVASVPIPEVIRNIDSFTLGARSVNPKATTAVVWVNKWFDPGKEREAATTLI 227

Query: 213 AQGVDTLYQNTDSPAPVQVAQSRKLYAFGQDSDMTRFGPDAHLTGNVLNWGVYYVHKVRQ 272
            QGVD L QNTDS A VQ AQ + +YAFG DSDMT FGP AHL  +V+NWGVYY  +V+ 
Sbjct: 228 GQGVDVLMQNTDSAAVVQTAQEKGVYAFGWDSDMTSFGPKAHLAASVINWGVYYTARVQA 287

Query: 273 VLEGKWKSEDTKWGMKEGIVQLAPLNPALPKDVVALVEQRRKAIIAGTLQPFAGPVNNQA 332
           VL+G WKS  +  G+KE  + LA  NP LP DV  LVE+R+K I+ G+   + GP+ + A
Sbjct: 288 VLDGSWKSSTSWIGLKENGIDLAAFNPELPADVKTLVEERKKGIVDGSAPIWKGPIKDNA 347

Query: 333 GQLQVAAGKTVPESELWTMKWYVEGIQGKQP 363
           G+  +       +  L  +K+YVEG+ GK P
Sbjct: 348 GKEVLGKDAVADDGFLHGIKFYVEGVDGKVP 378


>gi|300310744|ref|YP_003774836.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 365

 Score =  196 bits (499), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 179/337 (53%), Gaps = 11/337 (3%)

Query: 34  LKIGFIYPGPVADIGWSFQHDLGRRMLEREFGTRIETVFVERVPESPEAERVMRQLID-D 92
           L +GFIY G   D G++  H     ++++  G ++  +  E+VPE+   ++ M  +I  D
Sbjct: 30  LTVGFIYVGARDDFGYNQSHAQAAAVIKKMPGVKV--IEEEKVPETVAVQKTMEAMIQQD 87

Query: 93  GCKMIFATSFGFMNP-VIKVAAEYPDVIFEHCSGY----KSARNVGIYQTRFYEGAYLLG 147
           G  ++F TSFG+ +P V+K+A +YP V   HC G     K   NVG Y     E  YL G
Sbjct: 88  GATLLFPTSFGYFDPHVLKIAEKYPKVRIAHCGGLWTAGKHPMNVGSYFGYIEECEYLSG 147

Query: 148 TIAGRMTKTNTLGYVAPIPIPEVIRNLDAFVLGARSVNPKVTAKVVWINSWYDPGLERDA 207
            +AG M+K+  L ++A  PIP+V+RN++AF LGA+SV+P +T  V++   W  P  E +A
Sbjct: 148 VVAGYMSKSKKLAFIAAKPIPQVLRNINAFTLGAQSVDPAITCHVIFTGDWSLPVKEAEA 207

Query: 208 AQTLVAQGVDTLYQNTDSP-APVQVAQSRKLYAFGQDSDMTRFGPDAHLTGNVLNWGVYY 266
           A +L+ QG D +  + D P   V+ A+ R +   G  +      P  +LTG   NW   Y
Sbjct: 208 ANSLIDQGCDVITCHVDGPKVIVETAEKRGVMTTGYHASQASLAPKGYLTGAEWNWATPY 267

Query: 267 VHKVRQVLEGKWKSEDTKWGMKEGIVQLAPLNPALPKDVVALVEQRRKAIIAGTLQPFAG 326
              V+  LEGK      + G+K+  V+++P   A+        ++ +  ++AG  Q F G
Sbjct: 268 TEIVKATLEGKPMINFLRGGLKDNFVKMSPYGAAVSAPAKKKADEIKAQMLAGKFQIFKG 327

Query: 327 PVNNQAGQLQVAAGKTVPESE--LWTMKWYVEGIQGK 361
           P+ +  G   + AG T  +++  L  M + V G+ G+
Sbjct: 328 PIKDNKGNTVIPAGTTQVQTDVVLEKMNYLVAGVVGQ 364


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,121,953
Number of extensions: 47881
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,212,660
Effective search space: 335906820
Effective search space used: 335906820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)