BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0395.p (217 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313540|ref|YP_003777632.1| transcription regulator protein... 147 8e-37 gi|300313824|ref|YP_003777916.1| GntR family transcription regul... 116 1e-27 gi|300313534|ref|YP_003777626.1| GntR family transcription regul... 95 4e-21 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 71 5e-14 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 66 2e-12 >gi|300313540|ref|YP_003777632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 147 bits (370), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 10/223 (4%) Query: 2 KASRPSEPSET----------LDQGVYEAIFNGVMHGRLKPGTRLQEASLCEQFGVSRTV 51 KASRP+ P+ +++ +Y+ I++ +M RL P T+L E +LC+ + +R Sbjct: 6 KASRPATPARAPARERDNAVAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHT 65 Query: 52 VRQALRRLSEAQIVEIVANKGAAVATPGPRETRDVFAARRAIEGAIVREAARRIEHGDIE 111 VR+ L RL+ +V++ AN+GA +A+P P E RD+F R +E A++ + I Sbjct: 66 VRKVLARLAAEGMVDLEANRGAFIASPSPAEVRDMFELRNILEHAVLEKLGHTAGTRQIA 125 Query: 112 RLKQRLRAEHDALHEQDHPRWVALAGGFHLALAELSGNAVLQRMLTELMTRCSLIVALYE 171 L++ + E D D PRW+ L+ FHLALAEL+GNA+L L +L++R +L++A E Sbjct: 126 GLRRMVEEERDCYLNGDRPRWIRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTE 185 Query: 172 TPGEASCEHDEHARLVELLSLRDGNAAADEMERHLLALEARLQ 214 PG +C DEH ++E L D AA M HL E R++ Sbjct: 186 APGHNACSFDEHETVLEALEKGDIKAAQAHMAHHLHLCEDRVR 228 >gi|300313824|ref|YP_003777916.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 116 bits (291), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 108/207 (52%) Query: 7 SEPSETLDQGVYEAIFNGVMHGRLKPGTRLQEASLCEQFGVSRTVVRQALRRLSEAQIVE 66 S P+ + I + RL PG +L E +L + VSRT +R AL L++ ++V+ Sbjct: 4 SAPAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVD 63 Query: 67 IVANKGAAVATPGPRETRDVFAARRAIEGAIVREAARRIEHGDIERLKQRLRAEHDALHE 126 ++ +KGA V+ P ETR++F RR +E A+VRE R D RL+ L E A+ + Sbjct: 64 LIPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSD 123 Query: 127 QDHPRWVALAGGFHLALAELSGNAVLQRMLTELMTRCSLIVALYETPGEASCEHDEHARL 186 + L FH+ LA + GN VL +L +L R +LI LY++ +A+C +EH Sbjct: 124 DNMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAF 183 Query: 187 VELLSLRDGNAAADEMERHLLALEARL 213 + D A + ME HLL +E L Sbjct: 184 IAAARAGDTERAMELMEHHLLHVEQAL 210 >gi|300313534|ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 95.1 bits (235), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/209 (33%), Positives = 103/209 (49%), Gaps = 1/209 (0%) Query: 7 SEPSETLDQGVYEAIFNGVMHGRLKPGTRLQEASLCEQFGVSRTVVRQALRRLSEAQIVE 66 + PS + I ++ +L PGTRL E L + F VSRT VR+AL L IV Sbjct: 3 TNPSLKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGIVT 62 Query: 67 IVANKGAAVATPGPRETRDVFAARRAIEGAIVREA-ARRIEHGDIERLKQRLRAEHDALH 125 + A +G V P P + R+ F ARR IE ++R+A R + I +L++ + E A+ Sbjct: 63 VSARRGWFVIEPTPAQAREAFEARRVIELGLLRQARLRPVGDTAIGQLREHIAREEAAIA 122 Query: 126 EQDHPRWVALAGGFHLALAELSGNAVLQRMLTELMTRCSLIVALYETPGEASCEHDEHAR 185 D L G FH+ LAE GN++L L +L R +L L+++ +A EH Sbjct: 123 GADVGARSYLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCSEHVL 182 Query: 186 LVELLSLRDGNAAADEMERHLLALEARLQ 214 +VE L D A M HL +E+ L Sbjct: 183 IVEALERGDLEQAEQLMHDHLQHVESGLN 211 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 71.2 bits (173), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 14/208 (6%) Query: 10 SETLDQGVYEAIFNGVMHGRLKPGTRLQEASLCEQFGVSRTVVRQALRRLSEAQIVEIVA 69 ETL + V+ I + ++ G + PG+++ E L +G+SR +R+A+ RL ++ V Sbjct: 14 GETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVP 73 Query: 70 NKGAAVATPGPRETRDVFAARRAIEGAIVREAARRIEHGDIERLKQRLRAEHDALHEQDH 129 + GA V + ++F R ++EG R AA+R+ +++ L++ L HE+D Sbjct: 74 HVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDT-----HEKDE 128 Query: 130 P----RWVALAGG---FHLALAELSGNAVLQRMLT-ELMTRCSLIVALYE-TPGEASCEH 180 R G FH + + SGN +L R+L EL + Y TP Sbjct: 129 AFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPHRPRQAF 188 Query: 181 DEHARLVELLSLRDGNAAADEMERHLLA 208 EH R+++ L+ DG A M RH+ A Sbjct: 189 AEHHRILDALADGDGELADLLMRRHIGA 216 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 66.2 bits (160), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 7/201 (3%) Query: 11 ETLDQGVYEAIFNGVMHGRLKPGTRLQEASLCEQFGVSRTVVRQALRRLSEAQIVEIVAN 70 +T + + E+I + +L PG L E SL E+FGVSRT +R+AL +L+ IVE+ Sbjct: 5 KTRAEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPR 64 Query: 71 KGAAVATPGPRETRDVFAARRAIEGAIVREAARRI---EHGDIERLKQRLRAEHDALHEQ 127 +GA VA GP++ ++F E R AARR+ EH ++ Q +A DA Sbjct: 65 RGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDA---N 121 Query: 128 DHPRWVALAGGFHLALAELSGNAVLQRMLTELMTRCSLIVAL-YETPGEASCEHDEHARL 186 D + L FH + S N L L R L DEH + Sbjct: 122 DPDAYFYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQAV 181 Query: 187 VELLSLRDGNAAADEMERHLL 207 V+ + D D + H++ Sbjct: 182 VDAIISGDAEKTVDLLREHIM 202 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 678,144 Number of extensions: 26394 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 17 Length of query: 217 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 136 Effective length of database: 1,236,335 Effective search space: 168141560 Effective search space used: 168141560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)