BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0393.p
         (125 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309851|ref|YP_003773943.1| pyrophosphatase [Herbaspirillum...   159   7e-41

>gi|300309851|ref|YP_003773943.1| pyrophosphatase [Herbaspirillum
           seropedicae SmR1]
          Length = 137

 Score =  159 bits (402), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 77/118 (65%), Positives = 89/118 (75%)

Query: 5   SPSPTPSSDLAALRDIVRQFAEERDWQQFHTPKNLAMALSVEVAELVEHFQWLKTGEQDE 64
           + S  P SDL  LR ++RQF  ERDW +FHTPKNLAMALSVEVAEL+EHFQWL TG   E
Sbjct: 4   ATSAAPISDLHELRVMIRQFCSERDWLRFHTPKNLAMALSVEVAELLEHFQWLPTGADHE 63

Query: 65  LDDARRTGVRHELADSLVYLIRLADRLDVDLYDAVIEKMQLNREKYPADKVRGQSRKY 122
           LDDA R G+RHE+AD LVYLI+LAD   VDL  AV+EKMQLN  KYP +  R ++ KY
Sbjct: 64  LDDAAREGIRHEMADVLVYLIQLADHTGVDLRSAVLEKMQLNARKYPVELARCKADKY 121


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 330,424
Number of extensions: 11429
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,264,745
Effective search space: 63237250
Effective search space used: 63237250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)