BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0389.p (425 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310848|ref|YP_003774940.1| two component sensor histidine ... 115 6e-27 gi|300313895|ref|YP_003777987.1| two-component system sensor his... 115 8e-27 gi|300311514|ref|YP_003775606.1| two component sensor histidine ... 113 3e-26 gi|300313666|ref|YP_003777758.1| two component sensor histidine ... 105 7e-24 gi|300314018|ref|YP_003778110.1| two component sensor histidine ... 96 6e-21 >gi|300310848|ref|YP_003774940.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 465 Score = 115 bits (288), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 98/334 (29%), Positives = 160/334 (47%), Gaps = 33/334 (9%) Query: 102 CCVVYVRLDDGGLVRVQSLE--ELPMVEVVA------------YVLVFSTILAAVCIWLI 147 C V+Y+ L D L+R++ + E P + A Y+L+F +L A+ WL+ Sbjct: 141 CRVIYISLHDQALMRLRLHQPGEPPALRARAGPGGPASLFGLQYILLF-LVLIAMLAWLV 199 Query: 148 PHW--RDLEKLRLAAARFGGGRLDARVGLSGRSSIRQLSSHFDRMADRIGKLIHAQRDMV 205 R + +L AA+R G A + +G + IRQ + F+ M RI + I + M+ Sbjct: 200 ARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAAHAFNAMQARIRRQIQHRTHML 259 Query: 206 NAVSHELRTPLSRLEFGLDILQHHAPDTATENRILGLRKDVEELEALVAELLTLGMLEHD 265 A++H+L+TPL+R+ L+ + D + +++ D+ + +V E L L Sbjct: 260 AAITHDLQTPLTRMRLRLEKVS----DPGLQQKLI---DDLGVMHGMVREGLDLARSMDS 312 Query: 266 RQGVFTETVALPEFLRDTCGVTAEALALGKLELRCSVDGQLATVVTEARTLARAYSNLVR 325 + + + + + L C A+A + L+ S A V+ + L R +NL+ Sbjct: 313 SEKI--QALDIDSLLDSVCADAADAGQ--DVALQGSTR---AFVMAQPGALRRCLTNLID 365 Query: 326 NAAQHANSVVRVRAEMAAPDAWTLVVEDDGAGIPEAERERVFESFYRLDQSRDRATGGYG 385 NA ++ S RV + + + D G GIPE+E E VFE FYRL+ SR R TGG G Sbjct: 366 NACKYGKSA-RVSIALEQ-QKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTGGTG 423 Query: 386 LGLSIVKKIVARHGGSISVGGSELGGAMFIMRLP 419 LGL+I I H G + + GG ++ LP Sbjct: 424 LGLTIALNIAENHHGQLRLRNLAEGGLEVLLELP 457 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 115 bits (287), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 87/295 (29%), Positives = 145/295 (49%), Gaps = 9/295 (3%) Query: 132 VLVFSTILAAVCIWLIPH--WRDLEKLRLAAARFGGGRLDARVGLSGRSSIRQLSSHFDR 189 + V + +LAA + I R L ++ A R G RV + + L+ F++ Sbjct: 177 IAVVAVMLAAFLVVRISGVLTRPLTRVARATHRLASGDYAIRVEVESGDEVGMLAQDFNQ 236 Query: 190 MADRIGKLIHAQRDMVNAVSHELRTPLSRLEFGLDILQHHA--PDTATENRILGLRKDVE 247 +A + + +R+ + VSHELRTPL+ L L+ L+ PD T + L+ +VE Sbjct: 237 LAMTLERNEKLRREFMADVSHELRTPLAILNGQLEALEDGVLQPDAQT---LRSLKSEVE 293 Query: 248 ELEALVAELLTLGMLEHDRQGVFTETVALPEFLRDTCGVTAEALALGKLELRCSVDGQLA 307 L LV +L L + + + L LRD+ + ++ + + L C + + Sbjct: 294 HLNKLVGDLYDLSLADAGALTYRRADIDLAPLLRDSAALYSDRFSQRGMRLSCELPASM- 352 Query: 308 TVVTEARTLARAYSNLVRNAAQHANSVVRVRAEMA-APDAWTLVVEDDGAGIPEAERERV 366 V +A L + SNL N+ ++ ++ R++ W LV +D G+P R+ Sbjct: 353 PVHGDAARLQQLLSNLFENSLRYTDAGGRLQVHAHLQQQHWHLVFDDSEPGVPPEVMARL 412 Query: 367 FESFYRLDQSRDRATGGYGLGLSIVKKIVARHGGSISVGGSELGGAMFIMRLPLR 421 FE F+R++ SR+RA+GG GLGL+I ++IV H G+I S LGG ++ LP R Sbjct: 413 FERFFRVEASRNRASGGAGLGLAICRRIVDAHQGTIGASASPLGGLRVVVVLPAR 467 >gi|300311514|ref|YP_003775606.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 473 Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 98/310 (31%), Positives = 153/310 (49%), Gaps = 27/310 (8%) Query: 123 LPMVEVVAYVLVFSTILAAVCIWLIPHWRDLEKLRLAAARFGGGRLDARVG--LSGRSS- 179 +P+V + LVF+ +LA W H + L+ A + G LD + +S R+ Sbjct: 166 MPIVVALLASLVFALLLA----WYFSH--PIGHLKNAFNQAANGNLDLELEPVMSARNDE 219 Query: 180 IRQLSSHFDRMADRIGKLIHAQRDMVNAVSHELRTPLSRLE--FGLDILQHHAPDTATEN 237 + L FD M ++ L+ +QR +++ VSHELR+P++RL+ GL +Q T Sbjct: 220 LADLGRDFDVMTAKLRTLMESQRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLE 279 Query: 238 RILGLRKDVEELEALVAELLTLGMLEHDRQGVFTETVALPEFLRDTCG-VTAEALALGKL 296 RI ++ ++ LV ELLTL LE + G E +A+ L D + EA A+GK Sbjct: 280 RI---ERESVRMDKLVGELLTLSRLEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGK- 335 Query: 297 ELRCSVDGQL---ATVVTEARTLARAYSNLVRNAAQHA--NSVVRVRAEMAAPDA-WTLV 350 VD QL V L RA N++RNA +H + V++ ++ + L Sbjct: 336 ----HVDDQLDCRVQVKGNPELLYRAIENVLRNAIKHTAPGTTVQIHTQLDEINKLLHLS 391 Query: 351 VEDDGAGIPEAERERVFESFYRLDQSRDRATGGYGLGLSIVKKIVARHGGSISVGGSELG 410 + D G G+PE E +FE F+R +++ ++ G+GLGLSI ++IV H G I G Sbjct: 392 ILDRGPGVPEEEMNSIFELFFRSSRTKSNSS-GHGLGLSIARRIVEAHQGFIQAANRSNG 450 Query: 411 GAMFIMRLPL 420 G + LP Sbjct: 451 GLRVDITLPF 460 >gi|300313666|ref|YP_003777758.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 479 Score = 105 bits (262), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/263 (31%), Positives = 133/263 (50%), Gaps = 21/263 (7%) Query: 151 RDLEKLRLAAARFGGGRLDARVGLSGRSSIRQLSSHFDRMADRIGKLIHAQRDMVNAVSH 210 + L+ + AA + GG A + G + + F+ M RI I + + AVSH Sbjct: 227 KPLQVMAEAAEKLGGNIRSAPLATDGPLEVSTAAQAFNAMQRRIIDNIAERTRFLAAVSH 286 Query: 211 ELRTPLSRLEFGLDILQHHAPDTATENRILGLRKDVEELEALVAELLTLGM-LEHDRQGV 269 +LR+P++R++ ++L PD + + RKD++E++AL++ L + ++ + Sbjct: 287 DLRSPITRMKLRTEML----PDERGKEK---FRKDLDEMDALISATLNVVQDIDVQERPQ 339 Query: 270 FTETVALPEFLR-DTCGVTAEALALGKLELRCSVDGQLATVVTEARTLARAYSNLVRNAA 328 + +L E LR D V E ++ G A + R+L R NLV NA Sbjct: 340 LIDLDSLLESLRTDQAEVGGE----------VTLSGHAAPLQGYPRSLRRCLQNLVENAV 389 Query: 329 QHANSVVRVRAEMAAPDAWTLVVEDDGAGIPEAERERVFESFYRLDQSRDRATGGYGLGL 388 ++ RV+ + A D + V+DDG GIPEA ERV E FYRL++SR+ TGG+GLGL Sbjct: 390 RYGQRA-RVQLQDDA-DQVCIRVDDDGPGIPEALLERVQEPFYRLERSRNAGTGGFGLGL 447 Query: 389 SIVKKIVARHGGSISVGGSELGG 411 SI +V H G + + GG Sbjct: 448 SIAATVVQAHRGVMKLVNRPGGG 470 >gi|300314018|ref|YP_003778110.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 492 Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 134/290 (46%), Gaps = 16/290 (5%) Query: 138 ILAAVC--IWLIPHWRDLEKLRLAAARFGGGRLDARVGLSGRSSIRQLSSHFDRMADRIG 195 +L A C +WL R + +L A R G R D + + G + IR+L D + R+ Sbjct: 208 VLLAFCFGLWLS---RPMARLEQAIGRLGDNRFDQPIDVRGPADIRRLGQQLDWLRQRLA 264 Query: 196 KLIHAQRDMVNAVSHELRTPLSRLEFGLDILQHHAPDTATEN-----RILGLRKDVEELE 250 L + + VSHEL+TPL+ L G +L T++ RI LR++ + L+ Sbjct: 265 DLEAEKSRFLRHVSHELKTPLAALCEGAALLDDGVAGQLTDSQREIARI--LRQNTQSLQ 322 Query: 251 ALVAELLTLGMLEHDRQGVFTETVALPEFLRDTCGVTAEALALGKLELRCSVDGQLATVV 310 + +LL + D Q + V L L + + L EL+ ++G TVV Sbjct: 323 TQIEDLLRYNEVSFDAQRIHPVPVDLRALLHKV--IDDQRLQWLARELKVEIEGAARTVV 380 Query: 311 TEARTLARAYSNLVRNAAQHANSVVRVRAEMA-APDAWTLVVEDDGAGIPEAERERVFES 369 + +A +NL+ NA + + +R ++ AP + D G G+ + R+FE Sbjct: 381 VDPEKMAIVLANLLSNAVRFSPQGGFIRFLLSEAPGLVRVECVDQGPGVAPTDAARIFEP 440 Query: 370 FYRLDQSRDRATGGYGLGLSIVKKIVARHGGSISVGGSELGGAMFIMRLP 419 FY+ A G G+GLS+V++ V H G + + E GGA F + LP Sbjct: 441 FYQGLNQPTAARRGNGIGLSVVREYVQAHSGKVYLVPRE-GGAHFRIELP 489 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,240,702 Number of extensions: 50832 Number of successful extensions: 330 Number of sequences better than 1.0e-08: 39 Number of HSP's gapped: 285 Number of HSP's successfully gapped: 39 Length of query: 425 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 337 Effective length of database: 1,203,190 Effective search space: 405475030 Effective search space used: 405475030 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)