BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0384.p
         (225 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309513|ref|YP_003773605.1| alkylhydroperoxidase AhpD [Herb...   221   4e-59

>gi|300309513|ref|YP_003773605.1| alkylhydroperoxidase AhpD
           [Herbaspirillum seropedicae SmR1]
          Length = 177

 Score =  221 bits (563), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 116/177 (65%), Positives = 135/177 (76%), Gaps = 1/177 (0%)

Query: 48  MPRLHTQDISTVTGPAAQLFTAIKGAVGKVPNAYADIGSNSPVALEAALNLDAALRKSSL 107
           M RL    +S  +G AAQLF AIK AVG VPNAYA IG+ SPVALE+AL+LD ALRKSSL
Sbjct: 1   MSRLTIAPLSEASGQAAQLFAAIKSAVGMVPNAYAGIGTLSPVALESALHLDGALRKSSL 60

Query: 108 KGKQVEAIKLAVSEAVECDYCLAAHSLMAKKLGFSAEAVIGLRRAEASGDAQLDALTVFV 167
             K++EA+KLAVS+   CDYCLAAH+LM +K G  A+A+ G+R  + SGD +LD L  FV
Sbjct: 61  SAKEIEAVKLAVSQQAGCDYCLAAHTLMGRKAGLDAQAIQGVRHGQPSGDDRLDVLADFV 120

Query: 168 RELVTTRGTVPAASVAAVKAAGYSDAQIVDTLLAVTAITFTNLFNRVNDTVLDFPAA 224
           R LV + GTV A+ V  V+A  YSDAQIVD LLAVTAITFTNLFNRVNDTVLDFP A
Sbjct: 121 RGLVGSSGTVAASVVERVRAV-YSDAQIVDILLAVTAITFTNLFNRVNDTVLDFPPA 176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 545,078
Number of extensions: 17183
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,231,600
Effective search space: 176118800
Effective search space used: 176118800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)