BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0380.p
         (232 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309856|ref|YP_003773948.1| repressor transcription regulat...   325   2e-90

>gi|300309856|ref|YP_003773948.1| repressor transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 262

 Score =  325 bits (832), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 172/232 (74%), Positives = 193/232 (83%), Gaps = 1/232 (0%)

Query: 1   MRRADRLFQITQYLRGRRLTTARQLAEWLSVSERTVYRDIRDLSLSGVPVQGEAGVGYRI 60
           MRRADRLFQITQYLRGRRLTTARQLA WLSVSERT+YRDIRDLSLSGVPV GEAGVGYRI
Sbjct: 28  MRRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVGYRI 87

Query: 61  NKTGFDLPPLMFSPDEIDALVIGMRMVQAWGGPQLAASAAASLAKIVLALPKDKRDFVEN 120
            K G+DLPPLMF+ DEIDALVIGMRMVQAWGGPQL ASAA++LAK+VLALPK+KRDFVE 
Sbjct: 88  -KPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEA 146

Query: 121 TALFAPSFHIDQAHGERLEEIRQAIGKRCTLQLDYVDARGQATQRIVWPLALYFWGGGWS 180
           T LFAP+   +   GERLE IRQAIG R  L LDY DA+ +A+QR+VWPLAL F+GG W 
Sbjct: 147 TPLFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGTWL 206

Query: 181 IAAWCETRSDFRSFRLDRVRAMMPAHTYPDESGKRLADFVRAVRKSQYQDSA 232
           +AAWCE R DFRSFRLDRV+ M     YPD +G+RL DFVRA+++   Q  A
Sbjct: 207 LAAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQVRQARA 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 712,791
Number of extensions: 29021
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,231,600
Effective search space: 184740000
Effective search space used: 184740000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)