BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0378.p
         (350 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309858|ref|YP_003773950.1| Na+-dependent transporter prote...   405   e-114
gi|300312029|ref|YP_003776121.1| Na+-dependent transporter prote...   363   e-101

>gi|300309858|ref|YP_003773950.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  405 bits (1040), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/302 (76%), Positives = 260/302 (86%), Gaps = 4/302 (1%)

Query: 49  MHLASNTAIALLFFLHGARLSREAALSGFKQPRLHLLTLACTFVLFPLLGLALQHLFPGL 108
           MH+ASN AI+LLFFLHGA+LSREAAL+G KQPRLHLLTL  TF+LFPLLGL L+ + P L
Sbjct: 1   MHVASNVAISLLFFLHGAKLSREAALAGLKQPRLHLLTLGSTFLLFPLLGLGLKAVAPDL 60

Query: 109 LTQELWLGVLFVCTLSSTVQSSIAFTSIARGNVPAAICGATASNLLGIVFTPVLVTLLLH 168
           LT +LW+GVLFVCTLSSTVQSSI FTSIARGNVPAAICGATASNLLGI+ TP+LVTLLLH
Sbjct: 61  LTPQLWMGVLFVCTLSSTVQSSIGFTSIARGNVPAAICGATASNLLGILVTPLLVTLLLH 120

Query: 169 RHHDGGGLRQVSGILLQLLLPFVLGNVLRPWIGDWVLRKKGLLAVVDRGGILLAVYAAFS 228
           RHH+  GL QV  ILLQLLLPFVLGN+LRPWIGDW+ R K ++ VVDRGGILL+VYAAFS
Sbjct: 121 RHHEANGLSQVLSILLQLLLPFVLGNLLRPWIGDWINRHKVIVNVVDRGGILLSVYAAFS 180

Query: 229 VAVAQGVWHLFPPQQLALLVLVNAILLGGVLTLTTFGSRALGFARADEIVLVFCGSKKSL 288
            AVAQG+WHLFPP QLALLVLVNA+LLG VL +TT+G+RAL   R DEIVLVFCGSKKSL
Sbjct: 181 AAVAQGIWHLFPPGQLALLVLVNAMLLGAVLLITTYGARALKMPRGDEIVLVFCGSKKSL 240

Query: 289 ASGIPMASVLFSSSGVGIVLLPIMVFHQMQLMLCAILARRYAERQDADDLLQAAADGKAQ 348
           ASGIP+ASVLF+ SG  +VLLPIM+FHQMQLMLCA+LARRYA +QD  D    A D  +Q
Sbjct: 241 ASGIPIASVLFAGSGAAVVLLPIMLFHQMQLMLCAVLARRYAAQQDHLD----ADDASSQ 296

Query: 349 TA 350
            A
Sbjct: 297 RA 298


>gi|300312029|ref|YP_003776121.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score =  363 bits (932), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/329 (55%), Positives = 234/329 (71%), Gaps = 2/329 (0%)

Query: 19  RYFPDTFTWMLLGTVLLATLLPATGRFEELMHLASNTAIALLFFLHGARLSREAALSGFK 78
           R+ PD  T +LL  V+ A+LLP TG+  E+    +   I LLFF+HGA+LSREA ++GF 
Sbjct: 5   RFLPDNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVVAGFT 64

Query: 79  QPRLHLLTLACTFVLFPLLGLALQHLFPGLLTQELWLGVLFVCTLSSTVQSSIAFTSIAR 138
             +LH+  L CTF LFPL+GLA + L    +T EL+LG+LF+C L STVQSSIAFTS+AR
Sbjct: 65  HWKLHVTVLLCTFALFPLVGLAFKPLLTPFITPELYLGLLFLCVLPSTVQSSIAFTSVAR 124

Query: 139 GNVPAAICGATASNLLGIVFTPVLVTLLLHRHHDGG--GLRQVSGILLQLLLPFVLGNVL 196
           GNVPAAIC A+ASNLLGI  TP+LV  L+  H   G   L  +  I+ QLLLPFV G + 
Sbjct: 125 GNVPAAICAASASNLLGIFLTPLLVGALVVAHEGAGHSSLDSILKIVYQLLLPFVAGQIA 184

Query: 197 RPWIGDWVLRKKGLLAVVDRGGILLAVYAAFSVAVAQGVWHLFPPQQLALLVLVNAILLG 256
           RPWIG W+ R K  L  VD+  ILL VY AFS AV QG+WH  P   L  L+++NA+LL 
Sbjct: 185 RPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINAVLLA 244

Query: 257 GVLTLTTFGSRALGFARADEIVLVFCGSKKSLASGIPMASVLFSSSGVGIVLLPIMVFHQ 316
            ++ LTT+GSR LGF++ DEI +VFCGSKKSLASG+PMA VLFSS  +G+VLLP+M+FHQ
Sbjct: 245 LIMALTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVMLFHQ 304

Query: 317 MQLMLCAILARRYAERQDADDLLQAAADG 345
           +QLM+CA+LA RY  RQ+  +   A+  G
Sbjct: 305 LQLMVCAVLAARYGARQEEVEAAVASESG 333


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.142    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 879,141
Number of extensions: 30724
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 264
Effective length of database: 1,212,660
Effective search space: 320142240
Effective search space used: 320142240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)