BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0374.p
         (341 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309860|ref|YP_003773952.1| hypothetical protein Hsero_0525...   410   e-116

>gi|300309860|ref|YP_003773952.1| hypothetical protein Hsero_0525
           [Herbaspirillum seropedicae SmR1]
          Length = 545

 Score =  410 bits (1054), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/344 (59%), Positives = 260/344 (75%), Gaps = 3/344 (0%)

Query: 1   VPGVNGVNIKGQAVPALPVPDLGFNKDCVGAEPSKDDPDLLVAAIAGQPQLITNGVKINP 60
           VPG +G++I+G  VPA P+ D+GF K+CVGAEPS DDPDLL+A + GQP LI NGVK+NP
Sbjct: 201 VPGQDGIDIRGGKVPARPIADIGFAKECVGAEPSPDDPDLLIAMVPGQPSLIKNGVKVNP 260

Query: 61  IVEIEDVDLSTGNVEFSGTVKIKGDVKTGMRLRVSGDVFVGGTVEAAEIIAGGNITVKGG 120
           ++++E+VDLSTGN+ F GTV++ GDV TGM+L V GDV V GTVEAAEI+AGG++TVKGG
Sbjct: 261 VIDVENVDLSTGNLTFEGTVRVSGDVMTGMKLHVGGDVVVNGTVEAAEIVAGGSVTVKGG 320

Query: 121 IIGHAE---TQPGMASIVAKVKAEGCVQALFAESAHIEAGDSIMLAGNARQCEMLAGNEI 177
           +IGH+E      G  +I +++ ++  VQ +FAESAHIEA D I++ GNAR CE+LAGNEI
Sbjct: 321 VIGHSEGVAAGAGTTAIASRISSQKSVQVMFAESAHIEAADDILVLGNARHCELLAGNEI 380

Query: 178 LVGKTNPKLGQIIGGRAQATMLIKAVAFGSSSAATTRIQVGLDPYLEEKLRAKEQEFQRK 237
            VGK NP+ G IIGGR +AT +I+A   G+ +AA TRIQVGLDPYLEEK+  KEQE+ RK
Sbjct: 381 TVGKGNPRTGHIIGGRVEATNIIRANVIGAPTAAHTRIQVGLDPYLEEKIAIKEQEYSRK 440

Query: 238 LDDLNRVIKQLAHYKQNPEKARNGAGEEAELNRKLLAQEVKDLVAEQNEMKEDLVAAESA 297
           + +L+R IKQ ++YK NP+KA      E    RK LA EVK L+ E ++MKE +VAAE A
Sbjct: 441 VAELDRTIKQQSYYKLNPDKATPELLHETSDKRKALAYEVKVLLEEVSQMKEGMVAAEDA 500

Query: 298 RIVAVKAVYEGVEMRIAKQVWQVLSDLGGGTAQLQGGKISFGGK 341
           RI+  KAV+EG E+RI  +VW V SDLGGGTAQL  G I +  K
Sbjct: 501 RIIVAKAVHEGTELRIGHEVWPVQSDLGGGTAQLFEGDIRYNPK 544


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,070,283
Number of extensions: 43834
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,212,660
Effective search space: 309228300
Effective search space used: 309228300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 131 (55.1 bits)