BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0368.p (362 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp... 645 0.0 gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her... 271 5e-74 gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH... 113 3e-26 >gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbaspirillum seropedicae SmR1] Length = 362 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/362 (84%), Positives = 334/362 (92%) Query: 1 MSALFQPFKLKDVALRNRIAVPPMCQYSAIDGKVTDWHLSHYAGMARGGAGLVIVEATGV 60 MSALFQPFKLKDV+LRNRIAVPPMCQY A++GKV DWHLSHYA +ARGGAGLVIVEAT V Sbjct: 1 MSALFQPFKLKDVSLRNRIAVPPMCQYMAVEGKVNDWHLSHYASIARGGAGLVIVEATAV 60 Query: 61 SPEGRITPGCTGIWSDELAQAFAPIVREIKAAGAVPGIQIGHAGRKASANRPWEGDDHIA 120 SPEGRITPGCTGIWSD L QAF P+V+ IKAAGAVPGIQIGHAGRKASANRPWEGDDHIA Sbjct: 61 SPEGRITPGCTGIWSDALGQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHIA 120 Query: 121 ADDARGWDTIAPSAIAYGKDLAKVPRAMTLDDIARVRQDFVNAAVRARDVGFEWLELHFS 180 ADDARGWDT++PSAIAYG+ L KVP+AM+LDDIARVRQDFVNAAVRAR+ GFEWLELHF+ Sbjct: 121 ADDARGWDTLSPSAIAYGRGLPKVPKAMSLDDIARVRQDFVNAAVRAREAGFEWLELHFA 180 Query: 181 HGYLAQTFFSAHSNRRDDIYGGSVENRSRFLLETLRAVREVWPENLPLTVRFGVLEYDGR 240 HGYL Q+FFSAH+N+RDD+YGGSVENR+RFLLETLRAVREVWPE+L LTVRFGVLEYDGR Sbjct: 181 HGYLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWPEHLALTVRFGVLEYDGR 240 Query: 241 DEQTLAESIGLVREFKASGMDMISVTMGFTIPETSIPWGPAFLAPIVERVRREADVPVSS 300 DE+TL ESIG+VR+FK SGMDMISVT+GFTIPE IPWGPAFL PI +RVR EA VPVSS Sbjct: 241 DEETLMESIGVVRQFKDSGMDMISVTIGFTIPEVQIPWGPAFLGPIAKRVREEAAVPVSS 300 Query: 301 AWGFGTPEIAERVVKEQQLDLVMVGRAHLANPHWAYFAAKELGVERASWTLPAPYAHWLE 360 AWGFGTP +AE+ VK+ QLDLVMVGR+HL NPHW Y AAKELGVER SWTLPAPYAHWLE Sbjct: 301 AWGFGTPALAEQAVKDGQLDLVMVGRSHLVNPHWTYQAAKELGVERPSWTLPAPYAHWLE 360 Query: 361 RY 362 RY Sbjct: 361 RY 362 >gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 271 bits (694), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 162/348 (46%), Positives = 205/348 (58%), Gaps = 6/348 (1%) Query: 2 SALFQPFKLKDVALRNRIAVPPMCQYSAIDGKVTDWHLSHYAGMARGGAGLVIVEATGVS 61 S LF P L+ V L NRIAV PMCQYSA DG V DWHL H A GGAGLV++EAT V Sbjct: 3 SHLFSPLPLRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLVLMEATAVV 62 Query: 62 PEGRITPGCTGIWSDELAQAFAPIVREIKAAGAVPGIQIGHAGRKASANRPWEGDDHIAA 121 EGRI+ GIW DE I R I+ GAVPGIQ+ HAGRK+S RPW+G Sbjct: 63 AEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGRKSSILRPWDGPAGSVP 122 Query: 122 DDARGWDTIAPSAIAYGKDLAKVPRAMTLDDIARVRQDFVNAAVRARDVGFEWLELHFSH 181 A GW APSA+ + D P+AM+++ I + Q F +AA RA GF+ +ELH +H Sbjct: 123 PSAGGWTPQAPSALPF-DDGYSTPQAMSVEQIGALVQAFADAAQRALAAGFKVIELHGAH 181 Query: 182 GYLAQTFFSAHSNRRDDIYGGSVENRSRFLLETLRAVREVWPENLPLTVRFGVLEY-DGR 240 GYL F S SN+R D YGGS ENR RFLLE RA R VWPE LPL VR ++ DG Sbjct: 182 GYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRLSATDWVDG- 240 Query: 241 DEQTLAESIGLVREFKASGMDMISVTMGFTIPETSIPWGPAFLAPIVERVRREADVPVSS 300 T E++ L + + G+D++ V+ G P+ IP GP + RV+ EA + S Sbjct: 241 -GWTPEETVTLSQRLRELGVDLVDVSSGGNAPKAVIPVGPGYQTSFAARVKAEAGI-ASG 298 Query: 301 AWGFGTPEI-AERVVKEQQLDLVMVGRAHLANPHWAYFAAKELGVERA 347 A G T I AE +++ Q DLV++ R L +P+W AA++L E A Sbjct: 299 AVGMITDAIQAEHILRTGQADLVLLARELLRDPYWPLHAAQQLREEVA 346 >gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 120/231 (51%), Gaps = 22/231 (9%) Query: 2 SALFQPFKLKDVALRNRIAVPPMCQYSAIDGKV-TDWHLSHYAGMARGGAGLVIVEATGV 60 S LF+P +L V L+NRI + P+ + A G V +D +YA R GAGL+I EAT + Sbjct: 8 SDLFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYA--QRAGAGLIIAEATQI 65 Query: 61 SPEGRITPGCTGIWSDELAQAFAPIVREIKAAGAVPGIQIGHAGRKASANRPWEGDDHIA 120 SPEG+ GI++D A+ I + A G +Q+ H GR + P H Sbjct: 66 SPEGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGR---ISHPDLQPGHAL 122 Query: 121 ADDARGWDTIAPSAI-----AYGKDLAK---VPRAMTLDDIARVRQDFVNAAVRARDVGF 172 +APSA+ A+ + K PRA+ ++ + + + AA + GF Sbjct: 123 --------PVAPSAVQPEGQAFTESGFKPFVTPRALEAAELPAIVEQYKKAAQLSMQAGF 174 Query: 173 EWLELHFSHGYLAQTFFSAHSNRRDDIYGGSVENRSRFLLETLRAVREVWP 223 + +E+H ++GYL F +N+R D YGGS+ENR+R LLE ++AV V P Sbjct: 175 DGVEIHAANGYLLDQFLRDKTNQRTDGYGGSIENRARLLLEVVQAVTSVVP 225 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,259,186 Number of extensions: 56537 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 3 Length of query: 362 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 276 Effective length of database: 1,212,660 Effective search space: 334694160 Effective search space used: 334694160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)