BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0364.p
         (427 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator o...   636   0.0  
gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911...    94   2e-20

>gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator of
           sigma subunit [Herbaspirillum seropedicae SmR1]
          Length = 422

 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/415 (73%), Positives = 349/415 (84%)

Query: 8   FSLAPMMGRHLQQPTAEALAVDVPVITFEENNARVLEIFGCHRELVSLPVLENNHPIGLI 67
           FSL P  G  L QPTA ALAV VPV+ F++NNA VLEIF  H+ELVSLPV+E   PIGLI
Sbjct: 5   FSLTPATGSKLFQPTAGALAVQVPVVQFDQNNAAVLEIFDQHKELVSLPVVEQQRPIGLI 64

Query: 68  SRNIFMSQMSKPYHRELYEKKSCIAFMDKDPLIVEADTPIEMLGALAVASGDKTLADGFL 127
           SR+IFMSQMSKPYHRELYE+KSCIAFMDKDPLIV+ADTPIE LGALAVASGDKTLADGF+
Sbjct: 65  SRHIFMSQMSKPYHRELYERKSCIAFMDKDPLIVDADTPIETLGALAVASGDKTLADGFM 124

Query: 128 IVDGGKFAGLGSGLGLMRMLVDLQAEKNRQVMQSIDYASVIQRAMLSASRTAMAQAIGDA 187
           IV+ G+  GLGSGL LMR LVDLQ EKNRQVMQSIDYASVIQRAMLSASR AM  A+ DA
Sbjct: 125 IVEQGQLNGLGSGLALMRELVDLQVEKNRQVMQSIDYASVIQRAMLSASRAAMGAALQDA 184

Query: 188 CLVWEPRDVVGGDFYHLECFPDGWFAAVADCTGHGVPGAFLTLIASSAIKQALEQHGPRD 247
           CL+WEPRDVVGGDFYH E  P GWFAAVADCTGHGVPGAFLTLIASSA+KQALE HGPRD
Sbjct: 185 CLIWEPRDVVGGDFYHFEEHPQGWFAAVADCTGHGVPGAFLTLIASSALKQALELHGPRD 244

Query: 248 PALVMGEVNRSMKQVLGQHASATQLSESDDGMDACFFWFDAASHRLTCANAKMSLLTLQS 307
           PA +M EVNRSMK+VLGQH +  + SESDDGMDACFFWFD+AS  LTCANAKM+L  L +
Sbjct: 245 PARLMQEVNRSMKRVLGQHGAQDKPSESDDGMDACFFWFDSASRTLTCANAKMALFLLPA 304

Query: 308 GEDAVQTFDGERTGLGYVDTPDDMQWSNREVQLGDGAIVMIATDGIIDQIGGPKNIAFGK 367
            ++ VQT +G+R GLGYVDTP+DMQW+N  + + DG +V + TDGIIDQIGG K+IAFGK
Sbjct: 305 ADEQVQTVEGKRVGLGYVDTPEDMQWTNHCLPVADGDMVFVCTDGIIDQIGGAKHIAFGK 364

Query: 368 QRLRKSLLEHRDFPMAEVGKKIMEEQRLYQGQQRRRDDLTFFGFRVGGSFINHQQ 422
           QRLR++LLE+R  P+AE+G+ +M+  R YQG QRRRDD++FFG R+GG F +  +
Sbjct: 365 QRLRRTLLEYRRLPLAELGRTLMDVHRDYQGAQRRRDDISFFGARIGGVFSSQHE 419


>gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911
           [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 82/143 (57%), Gaps = 2/143 (1%)

Query: 15  GRHLQQPTAEALAVDVPVITFEENNARVLEIFGCHRELVSLPVLENNHPIGLISRNIFMS 74
           G+H    T   L  +   ++ E +N  V ++F    +L +LPV+ N  PIGLI+R   + 
Sbjct: 272 GKH--STTVFKLLRETRYVSPEVSNDTVYDMFVNDPQLQALPVVSNGLPIGLINRYSMVE 329

Query: 75  QMSKPYHRELYEKKSCIAFMDKDPLIVEADTPIEMLGALAVASGDKTLADGFLIVDGGKF 134
           + ++ Y RELY KKSC  FMD +P++ E  T ++ L  L V +    L++GF+I D G++
Sbjct: 330 RFARLYGRELYGKKSCAFFMDPNPILTEQSTSLQDLSNLLVHAESHHLSNGFIITDRGQY 389

Query: 135 AGLGSGLGLMRMLVDLQAEKNRQ 157
            GLG+G  L+R +  +Q +  R 
Sbjct: 390 MGLGTGHDLLREITQMQIDAARH 412


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,291,598
Number of extensions: 52286
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 427
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 339
Effective length of database: 1,203,190
Effective search space: 407881410
Effective search space used: 407881410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)