BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0360.p (1141 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 162 2e-40 gi|300311808|ref|YP_003775900.1| two component sensor histidine ... 157 6e-39 gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 150 8e-37 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 137 6e-33 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 128 3e-30 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 127/420 (30%), Positives = 192/420 (45%), Gaps = 60/420 (14%) Query: 760 ATRLK--AEEAVRLREEFLAVLSHELKHPLNLIQLNAELLKRIPLTQDQGKITRIADVIR 817 ATRLK A+ A + FLA++SHE++ P+N I +ELL L+ Q AD I Sbjct: 334 ATRLKEEADHANEAKSHFLAMVSHEIRTPMNGILGLSELLMESGLSSKQRDY---ADSIH 390 Query: 818 STVQTQAKIIDDLLDLSRAQTGKLTLRKTLVDIVGITEKITRVFETDTQNKGIELRYQSA 877 +II+D+LD S+ ++GKL L V + ++++ ++ Q K ++ Sbjct: 391 GATGGLVRIINDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPSLQRKDVQFDLHLD 450 Query: 878 VP-SLLVFGDTTRLEQILWNLLSNAVKFTPSGGKIFVTL-------GVEGSNALITVSDS 929 P +L V GD RL+Q+L NLLSNA+KFT G + +++ G ++D+ Sbjct: 451 CPENLSVVGDPARLKQVLGNLLSNAIKFT-QAGHVQLSMSARQDESGPSRWRLFFAITDT 509 Query: 930 GKGISSHFLPHIFRMFEQADAVTTREHGGLGIGLALVRQLAESHGGRVEVES-GGLEKGA 988 G GIS L +FR F QAD+ +R GG G+GLA+ + L E GG + +S G Sbjct: 510 GIGISPEALQQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQSIPGESTRF 569 Query: 989 KFSVWLP--------------------------------------LYDGDHADAPLQPID 1010 F + P L D+A P +D Sbjct: 570 SFEILCPEASTPAPEPVSEAAAPAPATALATTAPALPPAAEAPGTLMPPDNAPQPPSNVD 629 Query: 1011 EDL----DLLHGKTLLLIDDHIENLETLRDLLSSHGAIVTAKSSGVEALAETARRQFDLV 1066 LL G +L+ +D N + LR LL+ G I+ +G++A+ +DLV Sbjct: 630 ASATVLPSLLAGARILMAEDTEINRQLLRILLARKGCILQEVENGLQAVEAIRTGHYDLV 689 Query: 1067 VSDIAMPKMDGYQFIALLRKQPQGSAV---PVIALTGFGRAIDVQTAMESGFTAHLQKPI 1123 + D MP MDGYQ A +R + P+IALT D Q +++G +L KP Sbjct: 690 LMDCMMPIMDGYQATAEIRAHEAARGLPRTPIIALTASAIEGDRQRCLDAGMDDYLSKPF 749 >gi|300311808|ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 289 Score = 157 bits (396), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 99/261 (37%), Positives = 144/261 (55%), Gaps = 24/261 (9%) Query: 744 SKELETKREARLALETATRLKAEEAVRLREEFLAVLSHELKHPLNLIQLNAELLKRIPLT 803 ++ LET+R AR ++ TRLK +EFLA LSHEL+ PLN I + L + Sbjct: 30 ARVLETQRAARRQADSVTRLK--------DEFLATLSHELRTPLNAIVGWTQYL--LNDH 79 Query: 804 QDQGKITRIADVIRSTVQTQAKIIDDLLDLSRAQTGKLTLRKTLVDIVGITEKITRVFET 863 D ++ + VI + QA++++DLLD+SR GKL L +D+ + E+ Sbjct: 80 SDADRLVKGLQVIERNARLQAQMVEDLLDMSRMLAGKLRLETRPMDLASVAEEAIAAVRP 139 Query: 864 DTQNKGIELRYQSAVPSL----LVFGDTTRLEQILWNLLSNAVKFTPSGGKIFVTLGVEG 919 + + IEL P+L ++ GD RL+Q++WNLL NA+KFTP G++ ++L Sbjct: 140 AAEARQIELH-----PALGQGGVILGDPARLQQVVWNLLMNAIKFTPRQGRVSLSLRQHD 194 Query: 920 SNALITVSDSGKGISSHFLPHIFRMFEQADAVTTREHG----GLGIGLALVRQLAESHGG 975 + VSD+G+GI FL +F F Q D V+T G GLG+GLA+ R L E HGG Sbjct: 195 DTVALEVSDNGRGIKGEFLGSVFDRFTQED-VSTGSTGSTASGLGLGLAIARHLVELHGG 253 Query: 976 RVEVESGGLEKGAKFSVWLPL 996 ++ S G GA F+V LPL Sbjct: 254 QIRAASAGPGMGAAFTVTLPL 274 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 150 bits (378), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 133/425 (31%), Positives = 195/425 (45%), Gaps = 62/425 (14%) Query: 761 TRLKAEEAVRLREEFLAVLSHELKHPLNLIQLNAELLKRI-PLTQDQGKITRIADVIRST 819 RLKAE+A + FLA +SHE++ P+N + +LL+R PL Q + D + Sbjct: 886 ARLKAEQANSAKSLFLASVSHEIRTPMNGVLGMIQLLQRTQPLPAQQDYL----DKAEIS 941 Query: 820 VQTQAKIIDDLLDLSRAQTGKLTLRKTLVDIVGITEKITRVFETDTQNKGIELR--YQSA 877 ++ +++DLLD S+ +L L ++ + V G+ L Sbjct: 942 AKSLLNLLNDLLDFSKMDAKQLQLDLQAFELERFGHNLAAVLAGSPPQAGVSLHIALDPQ 1001 Query: 878 VPSLLVFGDTTRLEQILWNLLSNAVKFTPSG-------------GKIFVTLGVEGSNALI 924 +P LV GD RL+Q+L NL NA+KFT G G+ V L VE Sbjct: 1002 LPRRLV-GDAHRLQQVLVNLTGNALKFTHQGHIDVHFTRLDPLPGRT-VALRVE------ 1053 Query: 925 TVSDSGKGISSHFLPHIFRMFEQADAVTTREHGGLGIGLALVRQLAESHGGRVEVESGGL 984 VSD+G GI++ L IF F QA+A TTR +GG G+GLA+ + L GG+++V S Sbjct: 1054 -VSDTGIGIAADRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSS--- 1109 Query: 985 EKGAKFSVWLPL---YDGDHADAPL--------QPIDE-----------------DLDLL 1016 E G W L D D P QP+ D L Sbjct: 1110 EPGRGSRFWFDLQLAVDDDSVLGPAAADDAARPQPLQAASHTAGSRAPETARSAPDAQCL 1169 Query: 1017 HGKTLLLIDDHIENLETLRDLLSSHGAIVTAKSSGVE--ALAETARRQFDLVVSDIAMPK 1074 G +LL++D+ N + +LL+ GA VT SG A+A R FDLV+ D+ MP Sbjct: 1170 QGVQILLVEDNPVNRQVASELLALSGAQVTCADSGSMGVAMACDPARHFDLVLMDLQMPG 1229 Query: 1075 MDGYQFIALLRKQPQGSAVPVIALTGFGRAIDVQTAMESGFTAHLQKPIDLKNFAEIVKN 1134 MDG + +R Q + +P++A+T D Q +E+G H+ KPID+ ++ Sbjct: 1230 MDGIEATRRIRGQYELRGLPILAMTANASPEDKQRCIEAGMAGHIAKPIDIATLIPVLLA 1289 Query: 1135 IFHGE 1139 H E Sbjct: 1290 HLHHE 1294 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 137 bits (345), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 112/345 (32%), Positives = 173/345 (50%), Gaps = 25/345 (7%) Query: 745 KELETKREARLALETATRLKAEEAVRLREEFLAVLSHELKHPLNLIQLNAELL---KRIP 801 +E+E ++ L+ A AE A + F+A +SHEL+ PLN I A++L IP Sbjct: 662 QEIEAHKQTDAELQRAKE-AAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIP 720 Query: 802 LTQDQGKITRIADVIRSTVQTQAKIIDDLLDLSRAQTGKLTLRKTLVDIVGITEKITRVF 861 + VIR + + +ID LLD+++ + GK+ L + + E+I +F Sbjct: 721 PARKDA-----IGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMF 775 Query: 862 ETDTQNKGIELRYQSA--VPSLLVFGDTTRLEQILWNLLSNAVKFTPSGGKIFVTLGVEG 919 + KG+ R+ + +P + V D RL QIL NLL NAVKFT GG VTL + Sbjct: 776 APQAEQKGLHFRFDKSGRLPQI-VHADQKRLRQILINLLGNAVKFTDHGG---VTLRLRY 831 Query: 920 SN--ALITVSDSGKGISSHFLPHIFRMFEQADAVTTREHGGLGIGLALVRQLAESHGGRV 977 + A V D+G GI+ IF FE++ A RE G G+GLA+ R L GG + Sbjct: 832 AREIAYFDVIDTGIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGEL 891 Query: 978 EVESGGLEKGAKF--SVWLPLYDGDHADAPLQPIDEDLDLLHGKT--LLLIDDHIENLET 1033 V+S + +G+ F ++LP H P +++ + G + +L++DD Sbjct: 892 SVQSQ-VGQGSSFHLKIYLP---EVHVPRPRIKLEDQMSGYAGPSRHILVVDDQASQRRL 947 Query: 1034 LRDLLSSHGAIVTAKSSGVEALAETARRQFDLVVSDIAMPKMDGY 1078 L+D+L G V+ SG+ + DLV+ DIAMP+MDG+ Sbjct: 948 LKDMLMPLGFTVSEADSGLACMETLGHALPDLVLLDIAMPQMDGW 992 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 123/419 (29%), Positives = 187/419 (44%), Gaps = 64/419 (15%) Query: 757 LETATRLKAEEAVRLREEFLAVLSHELKHPLNLIQLNAELL---KRIPLTQDQGKITRIA 813 +E AT L E A + + EFLA +SHEL+ PLN + A+LL K+ L+ +Q R A Sbjct: 462 VEKATEL--ERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQ---VRFA 516 Query: 814 DVIRSTVQTQAKIIDDLLDLSRAQTGKLTLRKTLVDIVGITEKITRVFETDTQNKGI--E 871 I S +I+D+LDLS+ + GKL + + + ++++ F Q KG+ + Sbjct: 517 QTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADELSASFAITAQQKGLGFK 576 Query: 872 LRYQSAVPSLLVFGDTTRLEQILWNLLSNAVKFTPSGGKIFVTLGVEGSNALITVSDSGK 931 + + VP + D RL QIL NLLSNA+KFT G G V D+G Sbjct: 577 VEVEPGVPQRMET-DIQRLGQILKNLLSNAIKFTEKGEVSLRIYPDAGGRIAFAVRDTGI 635 Query: 932 GISSHFLPHIFRMFEQADAVTTREHGGLGIGLALVRQLAESHGGRVEVESGGLEKGAKFS 991 GI IF F QAD T R++GG G+GL++ R LA GG + V S L +G+ F+ Sbjct: 636 GIGEDQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIRVTS-RLGEGSIFT 694 Query: 992 VWL-PLYDGDH-------------------------ADAP---------------LQ--P 1008 + L PLY + A AP LQ Sbjct: 695 LSLPPLYSSEQAVSNTAPEPTPAAAAAASTLQAAHVATAPDVRINRTPAAAAPQRLQEIS 754 Query: 1009 IDEDLDLLH--GKTLLLIDDHIENLETLRDLLSSHGAIVTAKSSGVEALAETARRQFDLV 1066 ID+D D + + +L+I+D LRDL G S E +A + + Sbjct: 755 IDDDRDRIETSSRLILVIEDDAAFAMILRDLAREMGFQCVVTHSANEGVAAAEMYRPSAI 814 Query: 1067 VSDIAMPKMDGYQFIALLRKQPQGSAVP--VIALTGFGRAIDVQTAMESGFTAHLQKPI 1123 + D+ +P G + +++ P+ +P V+++ + AME G + KP+ Sbjct: 815 LMDMNLPDFSGLGVLDQIKRNPKTRHIPVHVVSVADYS-----HEAMERGAIGYALKPV 868 Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 6/125 (4%) Query: 1015 LLHGKTLLLIDDHIENLETLRDLLSSHGAIVTAKSSGVEALAETARRQ------FDLVVS 1068 + G+ +L+++D + N+ L +L G V +G EAL R Q DLV+ Sbjct: 1031 VFEGRRILVVEDDVRNIFALSSVLEPKGMKVEIARNGREALQALQRSQDKPDAPIDLVLM 1090 Query: 1069 DIAMPKMDGYQFIALLRKQPQGSAVPVIALTGFGRAIDVQTAMESGFTAHLQKPIDLKNF 1128 DI MP+MDG + +RKQ +P+IALT D + + +G ++ KP+D++ Sbjct: 1091 DIMMPEMDGLTAMREIRKQAVWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKL 1150 Query: 1129 AEIVK 1133 +V+ Sbjct: 1151 LSLVR 1155 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,234,541 Number of extensions: 133439 Number of successful extensions: 771 Number of sequences better than 1.0e-08: 58 Number of HSP's gapped: 696 Number of HSP's successfully gapped: 61 Length of query: 1141 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1045 Effective length of database: 1,165,310 Effective search space: 1217748950 Effective search space used: 1217748950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 136 (57.0 bits)