BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0357.p
         (131 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311621|ref|YP_003775713.1| competence- and mitomycin-induc...   139   6e-35
gi|300312661|ref|YP_003776753.1| competence- and mitomycin-induc...    99   1e-22

>gi|300311621|ref|YP_003775713.1| competence- and mitomycin-induced
           protein [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score =  139 bits (351), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/129 (56%), Positives = 91/129 (70%), Gaps = 2/129 (1%)

Query: 1   VASMLGAIDGCGDWLECGFVTYSPAAKIRVLGVNPATIERYGLSSEEVAREMAEGALKKS 60
           VA+ LG ++GCG WLE  FVTY+  AK  +L V  A ++RYGL+SEE+A  MA+GAL+ S
Sbjct: 30  VAAALGDVEGCGQWLEGAFVTYTEQAKEVMLRVARADMQRYGLTSEEIAERMAQGALEGS 89

Query: 61  GANVAIANTGVAGPDDAPDGTKAGTVCFAWGLQREDGAIRIHSETKLFEGDRNAVRHAAA 120
            A VAIANTGVAGPDDAPDGT AGTVCFAW +    G   + +  + F GDR AVR  AA
Sbjct: 90  AARVAIANTGVAGPDDAPDGTPAGTVCFAWIIHHPQGKT-LRTARRQFAGDRQAVREQAA 148

Query: 121 TYAI-ENLR 128
            ++I + LR
Sbjct: 149 QHSILQTLR 157


>gi|300312661|ref|YP_003776753.1| competence- and mitomycin-induced
           protein [Herbaspirillum seropedicae SmR1]
          Length = 160

 Score = 99.0 bits (245), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 5/129 (3%)

Query: 1   VASMLGAIDGCGDWLECGFVTYSPAAKIRVLGVNPATIERYGLSSEEVAREMAEGALKKS 60
           +A  +  I G  +W +CGFVTYS A+K  +L ++ A I ++G  SEE+A  MAEGA+  S
Sbjct: 33  IAHAITEIAGSSEWFDCGFVTYSNASKNELLDISEALIAQHGAVSEEIAGAMAEGAVANS 92

Query: 61  GANVAIANTGVAGPDDAPDGTKAGTVCFAWGLQREDGAIRIHSETKLFEGDRNAVRHAAA 120
            ++VA++ TG+AGP  A  G   GTVCF W +       + ++E  +F+GDR  VR    
Sbjct: 93  SSDVAVSTTGIAGPGGAVPGKPVGTVCFGWRVGD-----KTYTERLVFKGDRQQVRAQTV 147

Query: 121 TYAIENLRR 129
            ++++ L +
Sbjct: 148 EHSLKGLLK 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 458,399
Number of extensions: 19011
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 2
Length of query: 131
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 56
Effective length of database: 1,264,745
Effective search space: 70825720
Effective search space used: 70825720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)