BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0349.p
         (495 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309915|ref|YP_003774007.1| alkaline phosphatase D [Herbasp...   837   0.0  

>gi|300309915|ref|YP_003774007.1| alkaline phosphatase D
           [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score =  837 bits (2161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/498 (80%), Positives = 443/498 (88%), Gaps = 4/498 (0%)

Query: 1   LTSERLRPQVDSGVMSGDITRDTAMLWSRTDRAARMVVEYSVHENFKNAVTMVGPAALVR 60
           +TSERLRPQ+  GVMSGD+TRD+A+LW+R DR ARM+VEYS   NF N V + GP AL R
Sbjct: 46  VTSERLRPQLPGGVMSGDVTRDSAILWARADRNARMLVEYSTSGNFSNPVRIAGPTALAR 105

Query: 61  NDYTARVDLRGLPVSQRLYYRLRFQDLQHESAWSAPVTGSLIIPG---GGERDISFAFSG 117
            DYTARVDLR LP  QRLYYR+RFQDL HESA S P+TGSL++P    G  RDI+FAFSG
Sbjct: 106 EDYTARVDLRDLPAGQRLYYRVRFQDLVHESALSEPLTGSLMMPASAHGQARDITFAFSG 165

Query: 118 DEAGQGWGINEAWGGYRVYETMRRFKPDFFIHSGDQIYADGPIQAEVKLDDGSIWRNLVT 177
           DEAGQGWGINE WGGYRVYE+MRRF+PDFFIHSGDQIYADGPIQAEVKLDDGS+WRN+VT
Sbjct: 166 DEAGQGWGINEQWGGYRVYESMRRFRPDFFIHSGDQIYADGPIQAEVKLDDGSLWRNVVT 225

Query: 178 PAKSKVAQTLDDYRGNFAYNLMDVNKKRFMAEVPFLVQWDDHEVRNNWYPGQVIGAAEKR 237
            AKSKVAQTLDDYRGNFAYN++D NK+RF AEVPFLVQWDDHEVRNNWYPGQ IGAAEKR
Sbjct: 226 EAKSKVAQTLDDYRGNFAYNMLDANKRRFAAEVPFLVQWDDHEVRNNWYPGQEIGAAEKR 285

Query: 238 YQERELDVLRQRARQAMFEYNPFRIDVADPERIYRSFNYGPLLEVFMLDERSYRGANSPN 297
           Y ER +DVL  RARQAMFE+NPFRID ADP RIYRSFN+GPLLEVFMLDERSYRG NSPN
Sbjct: 286 YDERNIDVLAARARQAMFEHNPFRIDSADPFRIYRSFNHGPLLEVFMLDERSYRGRNSPN 345

Query: 298 RQPLQGPDAAFLGAAQMRWIKQALLRSRSTWKVIASDMPISIVVPDLNADVPQGTFEAWA 357
           RQ   G DA FLG  QMRWIKQALLRSRSTWK+IASDMP+SIVVPDLN DVP+GTFEAWA
Sbjct: 346 RQK-GGHDADFLGPEQMRWIKQALLRSRSTWKLIASDMPLSIVVPDLNPDVPKGTFEAWA 404

Query: 358 NADNGKPSGRELEVAELLRFIKRHNIRNVVWVTADVHYASATYYMPEKAQFTDFKPFWEF 417
           NADNGKPSGRELEVAELLRFIK+H+I+NVVWVTADVHYASAT+Y PE+AQFTDFKPFWEF
Sbjct: 405 NADNGKPSGRELEVAELLRFIKQHDIKNVVWVTADVHYASATHYAPERAQFTDFKPFWEF 464

Query: 418 VGGPLHAGTFGPGEIDRTFGPDVRYVGIPADMKQNRSPADLYQFFGIAKIDARTKVMTVS 477
           VGGP++AGTFGPGEIDRTFGPDVR+V IPADMKQNRSPA+L QFFGI KIDA++K +TV+
Sbjct: 465 VGGPINAGTFGPGEIDRTFGPDVRFVSIPADMKQNRSPAELLQFFGIGKIDAKSKTLTVT 524

Query: 478 LHNVEGSKLYGVEIAPEA 495
           LHN +G ++Y VE+ PEA
Sbjct: 525 LHNTDGKEIYKVELPPEA 542


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,713,341
Number of extensions: 78051
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 406
Effective length of database: 1,198,455
Effective search space: 486572730
Effective search space used: 486572730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)