BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0340.p
         (205 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312858|ref|YP_003776950.1| inhibition of septum formation ...   309   1e-85

>gi|300312858|ref|YP_003776950.1| inhibition of septum formation
           nucleotide-binding protein [Herbaspirillum seropedicae
           SmR1]
          Length = 204

 Score =  309 bits (791), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 155/204 (75%), Positives = 171/204 (83%), Gaps = 4/204 (1%)

Query: 1   MKLADKKIYLASKSPRRRELLRQIGIDFELLLNDKEVDEQVLPNEKPADYVARVTRDKLL 60
           MK AD+KIYLASKSPRRRELLRQIGIDFELLL+DKEVDE VLP E P DYVARVTR KL 
Sbjct: 1   MKPADQKIYLASKSPRRRELLRQIGIDFELLLSDKEVDESVLPGEAPMDYVARVTRAKLD 60

Query: 61  SARQTMLYRQLPMRPILSADTTVVVDDLILGKPADVREAVEMITRLSGRTHQVLTSVAV- 119
           SA+QTM+ RQLP RP+LSADTTVVVDDLILGKPAD  EAV MI+ LSGRTHQVLTSVAV 
Sbjct: 61  SAQQTMILRQLPHRPLLSADTTVVVDDLILGKPADHDEAVRMISLLSGRTHQVLTSVAVG 120

Query: 120 ---AFQEQMWQITQYSDVAFEALSDDMIRAYCSTQEPFDKAGGYGIQGLASIFIKDIAGS 176
                + Q+WQI Q SDV+F  L++  I AYC T EP+DKAG YGIQGLAS+FI +I GS
Sbjct: 121 VTMGVETQVWQIVQQSDVSFAPLTEQAIAAYCHTVEPYDKAGAYGIQGLASVFISNIVGS 180

Query: 177 HSGIMGLPLFETAQLLQKTGMRIL 200
           HSGIMGLPLFETAQLLQ+ G+RIL
Sbjct: 181 HSGIMGLPLFETAQLLQQAGVRIL 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 595,280
Number of extensions: 23242
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,236,335
Effective search space: 153305540
Effective search space used: 153305540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)