BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0337.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312855|ref|YP_003776947.1| nicotinic acid mononucleotide a...   339   1e-94

>gi|300312855|ref|YP_003776947.1| nicotinic acid mononucleotide
           adenylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score =  339 bits (869), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 163/219 (74%), Positives = 182/219 (83%)

Query: 13  PVHATRCIAILGGSFDPVHNGHVALGDHFVELLQPDELRVIPAGNPWQKHGLQATAAQRV 72
           P  A RCIA+LGGSFDPVHNGHV L +HFV+LLQPDELR+IPAGNPWQKHGLQA  A RV
Sbjct: 3   PPAAQRCIAVLGGSFDPVHNGHVRLAEHFVQLLQPDELRIIPAGNPWQKHGLQARPADRV 62

Query: 73  EMVELAFSHEHVPVVIDQQEIRRTTATYTIDTLQALRAELGPEVSIVFLMGADQLQHLDT 132
           EMV  AF  + VPVVID+QEIRR +ATYTIDTL+ALRAELGP+VSIVFLMGADQLQHLDT
Sbjct: 63  EMVRRAFDRQQVPVVIDEQEIRRASATYTIDTLRALRAELGPQVSIVFLMGADQLQHLDT 122

Query: 133 WQGWQQLFDHAHLCAAARPGFGIDAAQVPDVVMQEFTRRAGTEKEIRTTSHGKAYLASSL 192
           WQ WQ+LFD AHLCAA+RPGF +  A VP  V +EF RR    +EIR+T+HG  YLA  L
Sbjct: 123 WQHWQELFDLAHLCAASRPGFELADAHVPPAVREEFKRRNAAPQEIRSTTHGYGYLALGL 182

Query: 193 DVDISSTEIRSLLQRGERPESLIPARVLDYIEQHHLYQN 231
            VDISSTEIR+ LQRG RP+SLIP RVLDYIEQ HLY+N
Sbjct: 183 AVDISSTEIRAQLQRGTRPDSLIPGRVLDYIEQQHLYRN 221


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 739,110
Number of extensions: 29237
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)