BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0336.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312854|ref|YP_003776946.1| coproporphyrinogen III oxidase ...   521   e-149

>gi|300312854|ref|YP_003776946.1| coproporphyrinogen III oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  521 bits (1341), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 243/303 (80%), Positives = 267/303 (88%), Gaps = 2/303 (0%)

Query: 2   TATATASTIKAYLQDLQHRIVAALEGVDGKSFLTDSWERPEGGGGISRIIEEGNVFERGG 61
            A+   + +KAYLQDLQ RIVAALE  DGKSFL+DSWERPEGGGG SR++EEGN+ ERGG
Sbjct: 24  NASTNTAAVKAYLQDLQQRIVAALEAADGKSFLSDSWERPEGGGGTSRLLEEGNLLERGG 83

Query: 62  VGFSHVMGKNLPPSAAANRPEIAGREWEAMGVSLVLHPRNPYAPTVHMNVRFFVAKADGQ 121
           VGFSHVMGKNLPPSAAANRP +AGR WEAMGVSLVLHPRNPY PTVHMNVRFF   A+G+
Sbjct: 84  VGFSHVMGKNLPPSAAANRPHLAGRAWEAMGVSLVLHPRNPYVPTVHMNVRFFTTHAEGE 143

Query: 122 NQEPVWWFGGGMDLTPYYGFAEDATHFHRSCRDALAPFGDELHPRFKKWCDEYFYLKHRK 181
             E VWWFGGGMDLTPYYG  +DA HFHR+CRDAL P+GDEL+PRFK WCD+YFYLKHRK
Sbjct: 144 --EAVWWFGGGMDLTPYYGVEDDARHFHRTCRDALQPYGDELYPRFKTWCDDYFYLKHRK 201

Query: 182 EARGVGGIFFDDFNALPLDESFALMRSVGDGFIGAYLPILELRKDTPYGERERDFQAYRR 241
           E RGVGGIFFDDFNALP +++FA+ RSVGD F+ AYLPI+  R+DTPYGERERDFQAYRR
Sbjct: 202 EPRGVGGIFFDDFNALPFEQAFAMQRSVGDAFLAAYLPIVAARRDTPYGERERDFQAYRR 261

Query: 242 GRYVEFNLVFDRGTLFGLQSGGRTESILMSMPPVVKWRYDWQPPDGSPEARLYSDFLPHK 301
           GRYVEFNLVFDRGTLFGLQSGGRTESILMSMPP+VKWRYDW P  GSPEA LYSDFL HK
Sbjct: 262 GRYVEFNLVFDRGTLFGLQSGGRTESILMSMPPLVKWRYDWHPEPGSPEAALYSDFLVHK 321

Query: 302 EWI 304
           EW+
Sbjct: 322 EWL 324


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.141    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,060,791
Number of extensions: 46824
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)