BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0331.p
         (488 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312850|ref|YP_003776942.1| ATPase [Herbaspirillum seropedi...   763   0.0  

>gi|300312850|ref|YP_003776942.1| ATPase [Herbaspirillum seropedicae
           SmR1]
          Length = 550

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/558 (70%), Positives = 430/558 (77%), Gaps = 78/558 (13%)

Query: 1   MIKPLSIAQNQIQGQVQQLALLPSLVNRHGCITGATGTGKTVTLQVVAQALSDIGVPVFM 60
           MI PL IA +       QL LLP L NRHGCITGATGTGKTVTLQV+AQALS+IGVPVFM
Sbjct: 1   MIHPLPIATHS----GGQLCLLPQLANRHGCITGATGTGKTVTLQVLAQALSEIGVPVFM 56

Query: 61  ADVKGDLSGLSKAGVLSAKGKERLSSLGMDEPAWEALPVTFWDVFGEKGHPVRATISDMG 120
           ADVKGDLSGL KAG  S K   RL+ LG+ EPAW A PV FWDV+GE+GHPVRAT+SDMG
Sbjct: 57  ADVKGDLSGLGKAGSASPKTAARLAQLGLPEPAWAAAPVAFWDVYGEQGHPVRATVSDMG 116

Query: 121 PLMIARMLNLNDTQEGVLQLVFKIADDSGLLLLDTKDLRAMLQHVGDNAAIFKTEYGNIS 180
           PLM+ARMLNLNDTQ+GVLQLVFKIADD GLLLLDTKDLRAMLQHVG+NAA FKTEYGNIS
Sbjct: 117 PLMLARMLNLNDTQQGVLQLVFKIADDHGLLLLDTKDLRAMLQHVGENAAQFKTEYGNIS 176

Query: 181 AASIGAIQRGLIGIEEQGGDKFFGEPMLNIEDWMQTDAKGRGVINILAADKLLNAPRLYS 240
           AAS+GAIQRGLIGI+EQGGD+FFGEPMLNIEDWMQTDA GRGVINILAAD+L+NAPRLYS
Sbjct: 177 AASVGAIQRGLIGIDEQGGDRFFGEPMLNIEDWMQTDAHGRGVINILAADRLMNAPRLYS 236

Query: 241 TFLLWMLSELFEHLPEVGDLDKPKLVFFFDEAHLLFDEAPKPLLQKIEQVVRLIRSKGVG 300
           TFLLWMLSELFEHLPEVGDLDKPK+ FFFDEAHLLFDEAPKPLLQKIEQVVRLIRSKGVG
Sbjct: 237 TFLLWMLSELFEHLPEVGDLDKPKMAFFFDEAHLLFDEAPKPLLQKIEQVVRLIRSKGVG 296

Query: 301 VFFVTQNPLDIPDTVLGQLGNRVQHALRAYTPRDQKAVQAAAETFRANPQLNTATAITEL 360
           ++FVTQNPLDIPDTVLGQLGNRVQHALRAYTPRDQKAV AAAETFR NP LNTA AITEL
Sbjct: 297 IYFVTQNPLDIPDTVLGQLGNRVQHALRAYTPRDQKAVTAAAETFRPNPMLNTAQAITEL 356

Query: 361 GVGEALVSFLDEKGRPNIVERAYILMPGSQIGPITDDERKAFIASSVVAGVY------EK 414
           GVGEALVSFLDEKGRPN+VER Y+L P SQIGP++  ER+A IASS+VAGVY      E 
Sbjct: 357 GVGEALVSFLDEKGRPNMVERGYVLTPASQIGPLSQAERRALIASSLVAGVYEQAIDRES 416

Query: 415 AVDR---------------------------ESAYEKIKGRAAP---------------- 431
           A +R                           ++A+    GR+AP                
Sbjct: 417 AYERLKGRAVQQPPAAPQSVPQSAPAPSPVDDNAWGASAGRSAPGPASPSRPSGGTRIPP 476

Query: 432 ---------------------QAGNAPXGFFGNSAGSKGSSRRESPVEAMVKSAARSIGS 470
                                   +A  G FGN     G+ R +SP++AMVKSAARSIGS
Sbjct: 477 QQSQPQPQPIPQQGEGGGLGDLLKDAAGGIFGNG----GNRRSDSPLQAMVKSAARSIGS 532

Query: 471 QVGREIIRGVLGSLLKKR 488
           QVGRE+IRGVLGSL+KKR
Sbjct: 533 QVGRELIRGVLGSLMKKR 550


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,516,367
Number of extensions: 66590
Number of successful extensions: 220
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 2
Length of query: 488
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 399
Effective length of database: 1,198,455
Effective search space: 478183545
Effective search space used: 478183545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)