BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0329.p
         (326 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313869|ref|YP_003777961.1| superfamily II helicase [Herbas...   473   e-135

>gi|300313869|ref|YP_003777961.1| superfamily II helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 829

 Score =  473 bits (1217), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/320 (73%), Positives = 275/320 (85%), Gaps = 4/320 (1%)

Query: 1   MTGTPLENHLGELWAQFNFLMPGFLGEASTFARLWRKPIEENGETLRAQLLAQRVRPFIL 60
           MTGTPLENHLGELW+QF+FLMPGFLG+A +FARLWRKPIEE G+T+RA+LLAQRVRPFIL
Sbjct: 504 MTGTPLENHLGELWSQFHFLMPGFLGDARSFARLWRKPIEEQGQTVRARLLAQRVRPFIL 563

Query: 61  RRRKENVAAELPPKTVAIKLLQLQGRQRDLYESVRAAADKQVRRALERRGFTGSHVTIMD 120
           RRRK++V  ELPP++  I+ L LQGRQR+LYESVR AADKQVRRALERRG  GS VT+MD
Sbjct: 564 RRRKQDVLQELPPRSEIIERLPLQGRQRELYESVRMAADKQVRRALERRGLGGSQVTVMD 623

Query: 121 ALLKLRQVCCDPFLLKGGKGYKSAPKTIERAKIEMLRDMLPSLAAEGRRVLVFSQFTEML 180
           ALLKLRQVCCDP+LLK G+     PK +ERAKI+ L D LP+L AEGRR+LVFSQFT ML
Sbjct: 624 ALLKLRQVCCDPYLLKQGR----MPKGLERAKIDWLCDTLPALVAEGRRILVFSQFTGML 679

Query: 181 ELIETELDALELPWLSLTGKTPSAARGEVVAQFQRKDVPIMLVSLKAGGIGLNLTAADTV 240
           +LI  +L+ L+LP+L LTG+T  AAR +V+A FQ++  P+MLVSLKAGG+GLNLTAADTV
Sbjct: 680 KLIAAQLEPLQLPYLMLTGETEPAARADVIAGFQQEQTPLMLVSLKAGGVGLNLTAADTV 739

Query: 241 ILVDPWWNPAVEEQAIARAHRIGQDQAVLVYKLIIEGSIEERILELQERKSVLAEGVLGS 300
           +LVDPWWNPAVEEQAIARAHR+GQ + V VYKL+IEGSIEER+LELQ RKS LAEG+LG 
Sbjct: 740 VLVDPWWNPAVEEQAIARAHRLGQQRQVFVYKLVIEGSIEERLLELQARKSALAEGMLGR 799

Query: 301 DGAVTPKFGQAELDALIAPL 320
           D A T KFG+ EL AL+APL
Sbjct: 800 DDATTVKFGEEELQALLAPL 819


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,010,457
Number of extensions: 40847
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 241
Effective length of database: 1,217,395
Effective search space: 293392195
Effective search space used: 293392195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)