BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0328.p
         (581 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312849|ref|YP_003776941.1| drug/metabolite transporter (DM...   376   e-105
gi|300312848|ref|YP_003776940.1| NADPH:quinone oxidoreductase [H...   271   2e-73
gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase [H...    71   2e-13

>gi|300312849|ref|YP_003776941.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  376 bits (965), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/251 (75%), Positives = 217/251 (86%), Gaps = 1/251 (0%)

Query: 5   ALSPSISPRRAYLGGLLLAVVGAIFFSAKAIVAKLMYRYHVDAVMVISLRMMFSLPMFAV 64
           A +P  +PR+A+LGGLLLA+VGA+FFSAKAIVAKLMYRYHVDAVMVI+LRM+FS PMFA 
Sbjct: 3   AATPHPTPRQAFLGGLLLAIVGAVFFSAKAIVAKLMYRYHVDAVMVITLRMVFSFPMFAA 62

Query: 65  LAFWQARNSPPLAGRDYAKIAFLGLIGYYLSSFLDFLGLQYISAGLERLILFLTPSFVLL 124
           +A W+AR  PPL   D  +I  LGL+GYYLSSFLDFLGLQYISAGLERLILFLTPSFV+L
Sbjct: 63  VALWKARTQPPLGRGDGWRIVVLGLMGYYLSSFLDFLGLQYISAGLERLILFLTPSFVML 122

Query: 125 ISFTFYKRKVGLIEWGALLVSYLGTALVLQHDINTGGNNVVLGSVLVLGAAITYALYLIF 184
           I+F F+KRK G IEW ALLVSY GT LVLQHD++ GG++V+LGS LVLG+A +Y++YLI 
Sbjct: 123 IAFFFFKRKFGWIEWAALLVSYFGTVLVLQHDLHVGGSDVILGSALVLGSAFSYSIYLIS 182

Query: 185 SGELVRRVGAMRLVAYAMCVSSVACIIQFFILR-PASALVQPVQVYQLSLINAVFCTVLP 243
           SGELVRRVGA+RLVAYAMCVSSVAC+IQFF+LR PA  L Q   VYQLSL NAVFCTVLP
Sbjct: 183 SGELVRRVGAVRLVAYAMCVSSVACVIQFFVLRAPADLLTQVAPVYQLSLFNAVFCTVLP 242

Query: 244 VCLTMVAVSRI 254
           V LTMVAV+RI
Sbjct: 243 VFLTMVAVARI 253


>gi|300312848|ref|YP_003776940.1| NADPH:quinone oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  271 bits (692), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 131/158 (82%), Positives = 141/158 (89%)

Query: 424 VIGTVSTDEKAALAKAAGCTHVINYKTENFVERVKELTNGKGVPVVYDSIGKDTFIGSLD 483
           +IGTVS+DEKAALA   G  HVINYKTENFVERVKELT G+GV VVYDSIGKDTF+GSLD
Sbjct: 167 LIGTVSSDEKAALALQHGAAHVINYKTENFVERVKELTGGRGVQVVYDSIGKDTFLGSLD 226

Query: 484 CLSPRGMMVSFGNASGPVSPFGVSELASRGSLFLTRPSLGNYVATREALNATAGDLFAMV 543
           CL PRGMMVSFGNASGPV+PFGVSELASRGSLFLTRPSLGNY +TR  L+ATAGDLF MV
Sbjct: 227 CLRPRGMMVSFGNASGPVAPFGVSELASRGSLFLTRPSLGNYTSTRAELDATAGDLFDMV 286

Query: 544 EAKKVNIDINQRYALKDVGQAHADLEARKTTGSTILIP 581
              K++I+INQRYALKDV QAHADLE RKTTGSTILIP
Sbjct: 287 LGNKISIEINQRYALKDVAQAHADLEGRKTTGSTILIP 324


>gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 325

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 11/162 (6%)

Query: 424 VIGTVSTDEKAALAKAAGCTHVINYKTENFVERVKELTNGKGVPVVYDSIGKDTFIGSLD 483
           V  T  + EK    +  G    INYKTE+F   VKELT G+GV V+ D +G D     + 
Sbjct: 167 VFATAGSAEKCRACEELGAERAINYKTEDFEAVVKELTGGRGVDVILDMVGGDYLPREIK 226

Query: 484 CLSPRGMMVSFGNASGPVSPFGVSELASR-----GSLFLTRPSLGNYVATREALNATAGD 538
            L+  G +V      G      + ++  R     GS    RP     VA + A+ A   +
Sbjct: 227 ALADDGRLVFIAQLGGAKGQLDMGQVMRRRLTITGSTLRPRP-----VAFKAAIAAKLRE 281

Query: 539 -LFAMVEAKKVNIDINQRYALKDVGQAHADLEARKTTGSTIL 579
            ++ ++EA K+   I+ R+ L+   QAHA +E     G  +L
Sbjct: 282 HVWPLIEAGKIRPVIHHRFPLEQAAQAHAMMEGSTHIGKIML 323


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,507,549
Number of extensions: 56539
Number of successful extensions: 228
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 3
Length of query: 581
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 491
Effective length of database: 1,193,720
Effective search space: 586116520
Effective search space used: 586116520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 133 (55.8 bits)