BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0326.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309923|ref|YP_003774015.1| membrane protein [Herbaspirillu...   172   1e-44

>gi|300309923|ref|YP_003774015.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 138

 Score =  172 bits (435), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 95/138 (68%), Positives = 113/138 (81%)

Query: 1   MTTTILNTKADYAAFLLRVTSGLFFLAHAAMKIFVFTLPGTAAFFESLGLPGFLAYLIIL 60
           M+T  +NT+ADYAAFLLRVT G+FFL HA +KIFVFT  GT  FF SLG+PG+ AY +I 
Sbjct: 1   MSTVTVNTRADYAAFLLRVTMGVFFLVHAGLKIFVFTPAGTVGFFASLGVPGWFAYPVIA 60

Query: 61  LEVIGGIALVIGFYGDLLAIPLAIDLAGAIFTVHGKNGFFFSNPKGGWEYLAMWIVALIA 120
           LEV+GGIALV+G+YG  LA+PLA DL GAI  VHGK GFFF+NPKGGWEYLA+WIV LIA
Sbjct: 61  LEVVGGIALVLGYYGRWLALPLAADLLGAIVLVHGKAGFFFTNPKGGWEYLALWIVGLIA 120

Query: 121 VYLLGNGAFAVKRKSLNN 138
           V+LLG+GAFA+KR+    
Sbjct: 121 VFLLGDGAFALKREEPRR 138


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.146    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 392,279
Number of extensions: 13487
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)