BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0325.p
         (110 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309924|ref|YP_003774016.1| N6-adenine-specific DNA methyla...   184   9e-49

>gi|300309924|ref|YP_003774016.1| N6-adenine-specific DNA methylase
           [Herbaspirillum seropedicae SmR1]
          Length = 418

 Score =  184 bits (468), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 86/105 (81%), Positives = 96/105 (91%)

Query: 1   VDAEGNPTIGIMLTNPPYGERLSVRGDAAVPTDELFVAFFSAFGTTLKQRFAGWSVFLFS 60
           VDAEG P +GI+L+NPPYGER+ VRGD A+PT+ELF  FFSAF +TLKQRFAGWSVFLFS
Sbjct: 307 VDAEGKPLVGIILSNPPYGERIGVRGDRALPTEELFAQFFSAFSSTLKQRFAGWSVFLFS 366

Query: 61  ADLGLPKLLRLKEARKTPFFNGALECRLFRFDMVEGFNRREAAKP 105
           ADLGLPKL+RLKE+RKTPFFNGALECRLFRFDMV G+NRRE AKP
Sbjct: 367 ADLGLPKLMRLKESRKTPFFNGALECRLFRFDMVAGYNRREEAKP 411


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.142    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 378,720
Number of extensions: 14284
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 37
Effective length of database: 1,274,215
Effective search space: 47145955
Effective search space used: 47145955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 124 (52.4 bits)