BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0324.p
         (302 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312846|ref|YP_003776938.1| lipoprotein [Herbaspirillum ser...   215   3e-57

>gi|300312846|ref|YP_003776938.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 280

 Score =  215 bits (548), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 119/219 (54%), Positives = 153/219 (69%), Gaps = 11/219 (5%)

Query: 1   MKRLLGIIFTASSILLAGCASTISSDVTAFHAWPNDLPDKSYVFTPTKDQESSLEYRNYE 60
           MKR +  +   +++LL+GCA+ I ++VT+FHAW     DK Y F PTK+QE++LEY+NY 
Sbjct: 64  MKRWIYPLLALATLLLSGCATVIDNNVTSFHAWTPSYNDKPYAFAPTKEQENNLEYQNYA 123

Query: 61  QLVRAELQRLGFTDAAGAKAPFKATLKVAFSYGMQAGTVVVTQPVYDPFWYGPTYPGW-- 118
            L+R ELQ LGFT+A  A+   +A L+V+FSYGM    VVVT+P YDPF+YGP  PGW  
Sbjct: 124 SLIRQELQFLGFTEAKEAR---QAQLQVSFSYGMNTEQVVVTRPAYDPFFYGPA-PGWGR 179

Query: 119 -RGRPFGPWGP-GPFYDPFW-GPPMQTTTFPVFQRRLYLSITRADSDRKLYEVTVDSEGR 175
              RPFG +GP GPFYDPFW G PMQ+T++PVF RRL + IT A   +KL++V VDSEG 
Sbjct: 180 FGPRPFGFYGPYGPFYDPFWYGGPMQSTSYPVFLRRLQIGITEAGGGKKLFDVVVDSEGS 239

Query: 176 EATLPMAMPYMVASAFSEFPGPSGVSRAAVSRLKNSTTG 214
            A L  AMP MV +AF +FPGPSGV+R    R+K    G
Sbjct: 240 RAGLAAAMPAMVRAAFDDFPGPSGVTRQV--RIKVDKDG 276


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.131    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 748,444
Number of extensions: 24685
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,217,395
Effective search space: 264174715
Effective search space used: 264174715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)