BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0323.p
         (899 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312845|ref|YP_003776937.1| aminopeptidase N [Herbaspirillu...  1563   0.0  

>gi|300312845|ref|YP_003776937.1| aminopeptidase N [Herbaspirillum
           seropedicae SmR1]
          Length = 898

 Score = 1563 bits (4048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 756/900 (84%), Positives = 812/900 (90%), Gaps = 4/900 (0%)

Query: 1   MRTDTPPTIYRKDYAAPTYFVDTVEMGFDLEPELTRVATRIVMQRNPAAPGKDIELYGEE 60
           MRTDTP TIYRKDYAAP Y  DTVEMGFDL+P  TRVATRI M RNPAA  +D+ L+GEE
Sbjct: 1   MRTDTPQTIYRKDYAAPHYLADTVEMGFDLDPSDTRVATRITMTRNPAAKSRDLVLFGEE 60

Query: 61  LELVQLRLNGKTLTAR--DYRIQGGILRIAGAPAKVTLEIETTTQPQRNTSLMGLYVSNG 118
           LELV LRLNGK LT    D+RI GG+L I  APAKV LEIET   P RNTSLMGLYVSNG
Sbjct: 61  LELVALRLNGKLLTQAKGDFRIAGGVLTIPAAPAKVVLEIETLVHPDRNTSLMGLYVSNG 120

Query: 119 NFFTQCEAEGFRKITYFPDRPDVMGKYTVMLRADKKQYPVLLSNGNLIEEGELPGGRHYA 178
           NFFTQCEAEGFRKITYFPDRPDVM K+TVMLRADK +YPVLLSNGNLIEEG+LP GRHYA
Sbjct: 121 NFFTQCEAEGFRKITYFPDRPDVMAKFTVMLRADKARYPVLLSNGNLIEEGDLPDGRHYA 180

Query: 179 KWEDPFKKPSYLFALVAGKLVCQEEKYKLQSGREVLLQVWVEAGNLDKTQHAMDSLKNSI 238
           KWEDPFKKPSYLFALVAG LVCQEE  +L SGR+ LLQVWVE GNLDKTQHAMDSLKNSI
Sbjct: 181 KWEDPFKKPSYLFALVAGNLVCQEETVRLHSGRDALLQVWVEEGNLDKTQHAMDSLKNSI 240

Query: 239 RWDEERFGLELDLDRFMIVAVGDFNMGAMENKGLNIFNTKFVLANPRIATDVDYANIEAV 298
            WD +RFGL+LDLDRFMIVAVGDFNMGAMENKGLNIFNTK+VLANPRIATDVD+ANIEAV
Sbjct: 241 TWDVQRFGLDLDLDRFMIVAVGDFNMGAMENKGLNIFNTKYVLANPRIATDVDFANIEAV 300

Query: 299 VGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMIGSDSGRAVKRIDDVRVLRQ 358
           VGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMIGSDSGRAVKRIDDVRVLRQ
Sbjct: 301 VGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMIGSDSGRAVKRIDDVRVLRQ 360

Query: 359 AQFPEDAGPMAHPVRPDSFVEINNFYTVTVYEKGAEVVRMYQTLLGRDGFRKGMDLYFKR 418
           AQFPEDAGPMAHPVRPDS+VEINNFYTVTVYEKGAEVVRMYQTLLGRDGFRKGMDLYF+R
Sbjct: 361 AQFPEDAGPMAHPVRPDSYVEINNFYTVTVYEKGAEVVRMYQTLLGRDGFRKGMDLYFER 420

Query: 419 HDGQAVTCDDFRAAMADSNKRDLKQFERWYSQSGTPRVAASVRYDARARTLELTLEQSCP 478
           HDGQAVTCDDFRAAMAD+N RDL QFERWYSQ+GTP+V ASV YDA+ +TL LTLEQSCP
Sbjct: 421 HDGQAVTCDDFRAAMADANGRDLSQFERWYSQAGTPQVQASVDYDAKRKTLTLTLEQSCP 480

Query: 479 PTPGQKKKLPFHIPVAVGLLDRKGRDLALTLAGEKTARSAQTTRVLELTQAKQTFTFTNV 538
           PTPGQKKK PFHIPVAVGLLD +GRDLALTL GEK  ++  TTRVLELT+AKQ+F F NV
Sbjct: 481 PTPGQKKKQPFHIPVAVGLLDAQGRDLALTLEGEK--KAGPTTRVLELTKAKQSFRFVNV 538

Query: 539 AEKPVPSILRGFSAPVVLEYDYSDAELAFLMAHDSDPFNRWEAGQRLATRRLLNLTIAVQ 598
            +KPVPS+LRGFSAPV+L+YDYSDAELAFLMAHDSD FNRWEAGQRLATRRLLNLT+AVQ
Sbjct: 539 EQKPVPSLLRGFSAPVLLQYDYSDAELAFLMAHDSDAFNRWEAGQRLATRRLLNLTVAVQ 598

Query: 599 AARQSGHVVSVDSVLHSLQHDSALTDALRATLNDASLDPAFRELVLTLPSETMIAEQMEV 658
           AARQSGHVVSVD+VL++L+HD AL +ALRATL D +LDPAFRELVLTLPSETMIAEQME+
Sbjct: 599 AARQSGHVVSVDTVLNNLEHDGALANALRATLRDEALDPAFRELVLTLPSETMIAEQMEI 658

Query: 659 IDPQAIHAARQFLRRTLAKELSADLLKAYRDNHDTGAYSPDAAASGKRALKNVVLSYLAE 718
           IDP AIH ARQFLRR+LA+EL  DLL AY  N   G YSPDAA++G+RALKNV LSYLAE
Sbjct: 659 IDPHAIHVARQFLRRSLARELREDLLAAYHANQTPGDYSPDAASAGRRALKNVALSYLAE 718

Query: 719 LDDEQAHSLAQQQCDNANNMTDRLAALSALTNSGAAGKVKALEDFYNEFEQEALVIDKWF 778
           LDDEQA +LAQQQ   ANNMTDRLAALSA+ NS A GK +AL+ FY EFEQEALVIDKWF
Sbjct: 719 LDDEQAMTLAQQQDQQANNMTDRLAALSAILNSAAPGKSEALQRFYAEFEQEALVIDKWF 778

Query: 779 TLQATARTADVETVRTLAQHPAFTLKNPNRARSLIFSFCNGNPSAFHALDGSGYTFWAEQ 838
           TLQATAR ADV TVRTLA+HPAFTLKNPNRARSLIFSFCNGNPSAFHA DG+GY+FWAEQ
Sbjct: 779 TLQATARNADVNTVRTLAEHPAFTLKNPNRARSLIFSFCNGNPSAFHAPDGNGYSFWAEQ 838

Query: 839 VIALNGSNPQVAARLARSLDRWRKYSPALQERMRNALRQVAGTAKLSRDVAEVITKSLAD 898
           VIALN SNPQVAARLARSLDRWRKYSPALQE+MR AL+QVA   KLSRDVAEV+TK+LA+
Sbjct: 839 VIALNASNPQVAARLARSLDRWRKYSPALQEKMRLALQQVAAAPKLSRDVAEVVTKALAN 898


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,705,677
Number of extensions: 111683
Number of successful extensions: 335
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 1
Length of query: 899
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 805
Effective length of database: 1,174,780
Effective search space: 945697900
Effective search space used: 945697900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 135 (56.6 bits)