BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0322.p
         (494 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312844|ref|YP_003776936.1| fructose-1,6-bisphosphatase [He...   587   e-169

>gi|300312844|ref|YP_003776936.1| fructose-1,6-bisphosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score =  587 bits (1514), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 275/293 (93%), Positives = 286/293 (97%)

Query: 3   KRISLTQHLIEQQRLHNKIPSELRLLIEVVGRACKSISHAVGKGALGEVLGSAGSENVQG 62
           KRISLTQHLIEQQRLHNKIPSELRLLIEVVGRACKSISHAVGKGALGEVLGSAGSENVQG
Sbjct: 2   KRISLTQHLIEQQRLHNKIPSELRLLIEVVGRACKSISHAVGKGALGEVLGSAGSENVQG 61

Query: 63  EVQKKLDVISNEILLEANEWGGHLAGMASEEMETIHPIPNRYPKGEYLLMFDPLDGSSNI 122
           EVQKKLDVISNEILLEANEWGGHLA MASEEMETIH IPNRYPKGEYLLMFDPLDGSSNI
Sbjct: 62  EVQKKLDVISNEILLEANEWGGHLAAMASEEMETIHRIPNRYPKGEYLLMFDPLDGSSNI 121

Query: 123 DVNVSIGTIFSVLKAPDGMTTPSEKDFLQPGTKQVAAGYAVYGPQTVLVLTTGDGVHCFT 182
           DVNVSIGTIFSVLKAP+GMT P+E+DF+QPGT+QVAAGYAVYGPQTVLVLTTGDGVHCFT
Sbjct: 122 DVNVSIGTIFSVLKAPEGMTEPTEQDFMQPGTRQVAAGYAVYGPQTVLVLTTGDGVHCFT 181

Query: 183 LDREMGAWVLTQRDMQIPADTKEFAINASNARHWYPPVKRYVDEMLAGSTGPLGKDFNMR 242
           LDREMGAWVLTQ+D++IP DTKEFAINASN RHW+PPVKRYVDEMLAGSTG  GKDFNMR
Sbjct: 182 LDREMGAWVLTQKDIKIPEDTKEFAINASNQRHWFPPVKRYVDEMLAGSTGVRGKDFNMR 241

Query: 243 WIASMVADVHRILNRGGVFMYPADAREPDKPGKLRLMYEANPMAFIVEQAGGA 295
           WIASMVADVHRILNRGG+FMYPADAREP+KPGKLRLMYEANPMAFIVEQAGGA
Sbjct: 242 WIASMVADVHRILNRGGIFMYPADAREPNKPGKLRLMYEANPMAFIVEQAGGA 294


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,518,986
Number of extensions: 60902
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,198,455
Effective search space: 485374275
Effective search space used: 485374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)