BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0317.p
         (126 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [He...   119   7e-29
gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum serop...    81   3e-17

>gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase
           [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score =  119 bits (298), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 66/83 (79%), Gaps = 2/83 (2%)

Query: 3   LNELIGFKTVSRDSNLGLIEWARDYLQALGASVRLTYDRSTKKANLFATYGE-GPG-FGT 60
           L  LIGF TVSR+SNLGLIEW RD+L+  GA  RLTYD   +KANLFAT G+ GPG FGT
Sbjct: 20  LTTLIGFNTVSRESNLGLIEWVRDHLERHGAVTRLTYDAERRKANLFATLGDAGPGRFGT 79

Query: 61  VFSGHTDVVPADGQNWDSDPFIA 83
           VFSGHTDVVP  GQ WD+DPF+A
Sbjct: 80  VFSGHTDVVPVTGQKWDTDPFVA 102


>gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum
           seropedicae SmR1]
          Length = 395

 Score = 80.9 bits (198), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 52/91 (57%), Gaps = 9/91 (9%)

Query: 3   LNELIGFKTVSRDSNLGLIEWARDYLQALGASVRLTYDRSTKKANLFATY--------GE 54
           L  L+ F T SR+SNL LI   RD LQ  G +  L +++   KANLFAT         G 
Sbjct: 12  LETLVAFDTTSRNSNLELITTVRDSLQQQGVASWLAHNKDKTKANLFATLPATAGPHAGS 71

Query: 55  GPGFGTVFSGHTDVVPADGQNWDSDPFIATR 85
             G G V SGHTDVVP DGQ WD+DPF  T 
Sbjct: 72  TEG-GIVLSGHTDVVPVDGQKWDTDPFKLTE 101


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 454,116
Number of extensions: 18757
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 2
Length of query: 126
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,264,745
Effective search space: 64501995
Effective search space used: 64501995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)