BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0316.p
         (235 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [He...   296   1e-81
gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum serop...   185   2e-48

>gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase
           [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score =  296 bits (757), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 137/229 (59%), Positives = 174/229 (75%), Gaps = 7/229 (3%)

Query: 1   MMQPVLAHKGKQAYRCSVHGHSAHSSSPQLAINAVDFSAELIVKIREIAGTARTAGPWDE 60
           MMQPV+AHKGK++YRCSVHGH+AHSS P L IN++DF+A + +KIREIA   R +G  D+
Sbjct: 179 MMQPVIAHKGKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREIALRVRHSGVQDD 238

Query: 61  AFDVPYSTIVTTVIQGGTVINTIPDRCEFVFEHRFLPGVDPRQVMDELRCYVEREMLPQM 120
            FDVPYS+I TT+  GG   N IPD+ EFVFEHRFLPG+DP +V +E++ Y E+E+LPQM
Sbjct: 239 DFDVPYSSIATTLTSGGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEILPQM 298

Query: 121 RLQAGYAGDAETIGSVEFEVLSAYPGLDTSAGDSLARRAMHILGADRANKVGFGTEAGLF 180
           R+           G +EFE L++YPG+ T A D L   A+ ILG++RA KVGFGTE GLF
Sbjct: 299 RIDG-------VQGRIEFETLTSYPGMCTPADDPLVTSALRILGSERARKVGFGTEGGLF 351

Query: 181 SAAGIPAMVCGPGDIAHAHKPNEFVTLDQLARCEDFFDAYVRATSMGPV 229
             AG+PA++CGPGDIAHAHKPNEFVTL+QLARCE FFD ++ +  + PV
Sbjct: 352 GQAGMPAVICGPGDIAHAHKPNEFVTLEQLARCERFFDNFIASAHLQPV 400


>gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum
           seropedicae SmR1]
          Length = 395

 Score =  185 bits (470), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/216 (42%), Positives = 126/216 (58%), Gaps = 7/216 (3%)

Query: 2   MQPVLAHKGKQAYRCSVHGHSAHSSSPQLAINAVDFSAELIVKIREIAGTARTAGPWDEA 61
           M  V+AHKG   + C VHG SAHSS      NA++ +A LI  IR+ A   +  GP+D+ 
Sbjct: 177 MNVVVAHKGINVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQF 236

Query: 62  FDVPYSTIVTTVIQGGTVINTIPDRCEFVFEHRFLPGVDPRQVMDELRCYVEREMLPQMR 121
           FDVP+ST+ T  I+GG  +NTIP+ CEF +E R LPG+    +  ++  Y+   +LP+MR
Sbjct: 237 FDVPFSTMTTNQIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMR 296

Query: 122 LQAGYAGDAETIGSVEFEVLSAYPGLDTSAGDSLARRAMHILGADRANKVGFGTEAGLFS 181
            +   A        VE +  +  P L+     ++      + G  +  KV +GTEAGLF 
Sbjct: 297 TEFPDA-------RVEIDNFAGSPALEAVEQAAITELVRALTGDRQTRKVAYGTEAGLFQ 349

Query: 182 AAGIPAMVCGPGDIAHAHKPNEFVTLDQLARCEDFF 217
             GIP +VCGPGDI +AHKPNEFVTL Q+  CE F 
Sbjct: 350 QIGIPTIVCGPGDIGNAHKPNEFVTLAQMEHCEQFL 385


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 722,528
Number of extensions: 27734
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 3
Length of query: 235
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 153
Effective length of database: 1,231,600
Effective search space: 188434800
Effective search space used: 188434800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)