BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0311.p (191 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra... 172 2e-44 gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis tra... 142 2e-35 gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 132 2e-32 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 122 2e-29 >gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 172 bits (435), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 123/182 (67%), Gaps = 2/182 (1%) Query: 1 LLRSGGFSLTTAGWQDKH-FVSSTPGLPANYDPTGRPWYQDSLKAKKPLVTRPYRS-ATG 58 L +SGGF +TT G +DK F S+ GLPA YDPT RPWY+ ++ A KP++T+PY AT Sbjct: 85 LQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTARPWYKQAVAAGKPVLTKPYTDVATK 144 Query: 59 VILVSFTAPILREGIVYGVVAGGVSLDTVRQVVRAIHPTPASIGFVVDAGGTVIAHPDEK 118 +VSFTAP+++ G GVVA + LD V VVR+IHPTPAS F+VD G ++AHPD + Sbjct: 145 KPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSIHPTPASFAFLVDRDGLMLAHPDGQ 204 Query: 119 LLLKPATDIAPSLTVAQLDGMARDGSVSEVEMDGAGKWLRAVPIPGTDWRLVISLDRHDA 178 + KPA + LT +L+ +A D SEV ++GA K ++ VPI GT+W L++++D+ D Sbjct: 205 WVNKPAKEWNAELTPERLNALAADDKASEVMLEGAAKLVKGVPIKGTEWTLMLAMDKADV 264 Query: 179 GA 180 A Sbjct: 265 TA 266 >gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 142 bits (357), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 112/178 (62%), Gaps = 2/178 (1%) Query: 4 SGGFSLTTAGWQDKHF-VSSTPGLPANYDPTGRPWYQDSLKAKKPLVTRPYRSATGVILV 62 +GGF G+ DK + P +PA YDPT RPWY+ L+A KP V PY S +G++LV Sbjct: 88 AGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTRPWYKGVLQAGKP-VALPYVSTSGLLLV 146 Query: 63 SFTAPILREGIVYGVVAGGVSLDTVRQVVRAIHPTPASIGFVVDAGGTVIAHPDEKLLLK 122 + P++R+G++ VV G V+LD+V + +++IHPTP+S G +V+ GG +IAHPD +L K Sbjct: 147 ALARPVMRDGVLKAVVVGDVALDSVVENIKSIHPTPSSFGMLVEQGGRIIAHPDAQLRFK 206 Query: 123 PATDIAPSLTVAQLDGMARDGSVSEVEMDGAGKWLRAVPIPGTDWRLVISLDRHDAGA 180 A+++AP + + + +DG K +R +PGTDW +V+++D+ +A A Sbjct: 207 QASELAPEFSDLNVANAGPGQPPVHIVVDGREKLVRVQAVPGTDWNIVVAIDQQEASA 264 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/179 (45%), Positives = 107/179 (59%), Gaps = 2/179 (1%) Query: 4 SGGFSLTTAGWQDKHFVSSTPGLPA-NYDPTGRPWYQDSLKAKKPLVTRPYRSA-TGVIL 61 +GGF L G+ DKH V S A +YDPT RPWYQ + K +P++T PY SA TG +L Sbjct: 108 AGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPWYQQAAKTSEPVLTAPYTSASTGKLL 167 Query: 62 VSFTAPILREGIVYGVVAGGVSLDTVRQVVRAIHPTPASIGFVVDAGGTVIAHPDEKLLL 121 V+F + ++G V V A V LDTV V AI PTP S F+ D G +IAHP++KL L Sbjct: 168 VTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKPTPNSYAFLADLSGKIIAHPNDKLRL 227 Query: 122 KPATDIAPSLTVAQLDGMARDGSVSEVEMDGAGKWLRAVPIPGTDWRLVISLDRHDAGA 180 KP D+ ++T LD R G +V +DG + L + GTDW LV++LDR DA A Sbjct: 228 KPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQMLFVARVGGTDWLLVVALDRADALA 286 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 122 bits (305), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 102/177 (57%), Gaps = 5/177 (2%) Query: 3 RSGGFSLTTAGWQDKHFVSSTPGLPANYDPTGRPWYQDSLKAKKPLVTRPYRSAT-GVIL 61 +G F G+ DK ++ P +PA YDPT RPWY+ +++A KP++T PY AT G ++ Sbjct: 87 EAGSFDDAYIGYPDKRMLALHP-MPAGYDPTARPWYKQAVEAGKPVLTAPYVDATTGKLV 145 Query: 62 VSFTAPILREGIVYGVVAGGVSLDTVRQVVRAIHPTPASIGFVVDAGGTVIAHPDEKLLL 121 V+F P+ + + V+ V LD V + V I PTP+S F+V G +I HP+++L L Sbjct: 146 VTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGIKPTPSSFAFIVGKDGVIITHPNKELAL 205 Query: 122 KPATDIAPSLTVAQLDGMARDGSVSEVEMDGAGKWLRAVPIPGTDWRLVISLDRHDA 178 KP + + +L+ L GM + GS + + G L PI TDW LV++LD +A Sbjct: 206 KPVSSLDQTLSAQSLAGMKQGGSAT---IGGIRYLLFTQPIANTDWSLVVALDYREA 259 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.137 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 676,209 Number of extensions: 29906 Number of successful extensions: 110 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 4 Length of query: 191 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 111 Effective length of database: 1,241,070 Effective search space: 137758770 Effective search space used: 137758770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)