BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0310.p (223 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 277 5e-76 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 239 1e-64 gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra... 229 2e-61 gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis tra... 204 7e-54 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 201 5e-53 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 277 bits (709), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 144/212 (67%), Positives = 176/212 (83%), Gaps = 1/212 (0%) Query: 1 VLGASAVAALLLAALSTLVSSVATARSFTRLSRVRDAMDVIASGTGDLTQRLPVTGR-DE 59 +L +S V A+L+ L+ LV +R RL+ V+ A++ IA G GDLT+RL GR DE Sbjct: 291 MLVSSGVMAVLVTVLAALVLGALISRLLGRLTVVQGALEEIADGDGDLTRRLDTHGRSDE 350 Query: 60 VAQIASSFNRFVDKIEHVLLEIRDSSRTIHMASRDIASGNLDLSSRTEAQASSLEETAAA 119 + +I ++FNRFVDKIEHV+++IRD+S TIH ASRDIASGN+DLS RTE+QASSLE+TAAA Sbjct: 351 LGRIGAAFNRFVDKIEHVMIDIRDASHTIHAASRDIASGNMDLSQRTESQASSLEQTAAA 410 Query: 120 MEQITSSVQNNTDNAIQANRLSASASDIAGRGGDMVEQVVQAMNAINSSSRKVVEIISVI 179 MEQ+TSSV++N DNA+QAN+LS SAS IA +GG MVEQVVQ MN IN+SS+K+V+IISVI Sbjct: 411 MEQLTSSVRHNADNAMQANQLSQSASQIATQGGTMVEQVVQTMNGINASSQKIVDIISVI 470 Query: 180 DGIAFQTNILALNAAVEATRAGEQGRGFAVVA 211 DGIAFQTNILALNAAVEA RAGEQGRGFAVVA Sbjct: 471 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA 502 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 239 bits (610), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 130/214 (60%), Positives = 169/214 (78%), Gaps = 4/214 (1%) Query: 2 LGASAVAALLLAALSTLVSSVATARSFTRLSR----VRDAMDVIASGTGDLTQRLPVTGR 57 +GA + +LA L+ + S++ + + TRL R VR+AM+ IASG GDLT+RL +G+ Sbjct: 263 IGALMTLSTVLAVLAIVASAILLSYTITRLLRRLGVVRNAMEEIASGDGDLTRRLDTSGK 322 Query: 58 DEVAQIASSFNRFVDKIEHVLLEIRDSSRTIHMASRDIASGNLDLSSRTEAQASSLEETA 117 DE+AQI+ +FN F DKI LL+IR +S ++ ++S +IASGN+DLS+RTE QA SLEETA Sbjct: 323 DELAQISRAFNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSARTEQQAGSLEETA 382 Query: 118 AAMEQITSSVQNNTDNAIQANRLSASASDIAGRGGDMVEQVVQAMNAINSSSRKVVEIIS 177 +AME++TS+V+ N DNA QAN+L+ SASD+A GG +V QVV M++IN SSRK+V+IIS Sbjct: 383 SAMEELTSTVKQNADNARQANQLAVSASDVAVHGGQVVGQVVATMSSINESSRKIVDIIS 442 Query: 178 VIDGIAFQTNILALNAAVEATRAGEQGRGFAVVA 211 VIDGIAFQTNILALNAAVEA RAGEQGRGFAVVA Sbjct: 443 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 476 >gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 229 bits (583), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 119/193 (61%), Positives = 153/193 (79%) Query: 19 VSSVATARSFTRLSRVRDAMDVIASGTGDLTQRLPVTGRDEVAQIASSFNRFVDKIEHVL 78 + S+ T F RLSRVR AMD ++SG GDLT RL G DEV QI+ SFN FV++I +L Sbjct: 289 IMSLITTAVFQRLSRVRRAMDNLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQITGIL 348 Query: 79 LEIRDSSRTIHMASRDIASGNLDLSSRTEAQASSLEETAAAMEQITSSVQNNTDNAIQAN 138 ++R SS T+ ++S +IA+GN DLS+RTE QA +LEETA+AME++TS+VQ N++NA +AN Sbjct: 349 QDVRRSSDTVKISSTEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENARRAN 408 Query: 139 RLSASASDIAGRGGDMVEQVVQAMNAINSSSRKVVEIISVIDGIAFQTNILALNAAVEAT 198 L+ +AS IA +GG++V VV M AIN+SSR++ +II+VIDGIAFQTNILALNAAVEA Sbjct: 409 ELAGNASKIAAQGGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAA 468 Query: 199 RAGEQGRGFAVVA 211 RAGEQGRGFAVVA Sbjct: 469 RAGEQGRGFAVVA 481 >gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 204 bits (518), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 117/221 (52%), Positives = 153/221 (69%), Gaps = 9/221 (4%) Query: 10 LLLAALSTLVSSVATARSFTRLSRVRDAM-------DVIASGTGDLTQRLPVTGRDEVAQ 62 L A +TLV + +A S + +R ++ D I G GDL+ ++ + GRDEV Q Sbjct: 214 YLTIAAATLVIVMVSALSLLLVRNIRHSLHAATELADTI--GRGDLSSQIVLRGRDEVTQ 271 Query: 63 IASSFNRFVDKIEHVLLEIRDSSRTIHMASRDIASGNLDLSSRTEAQASSLEETAAAMEQ 122 + S R + +L ++ DS+ TI A+R+IASGNLDLSSRTEAQA SLEET +AM Q Sbjct: 272 LMLSLQRMTGSLVQILGKVNDSAATIETATREIASGNLDLSSRTEAQAGSLEETVSAMGQ 331 Query: 123 ITSSVQNNTDNAIQANRLSASASDIAGRGGDMVEQVVQAMNAINSSSRKVVEIISVIDGI 182 +T++V+ N DNA QA+ L+ SAS +AG+ G +V++V+ M AIN+SS K+V+IISVIDGI Sbjct: 332 LTTTVKQNADNARQADELAQSASGVAGQAGKVVDEVILTMEAINASSLKIVDIISVIDGI 391 Query: 183 AFQTNILALNAAVEATRAGEQGRGFAVVAXAPLPPPRRSKS 223 AFQTNILALNAAVEA RAGEQGRGFAVVA +RS S Sbjct: 392 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS 432 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 201 bits (510), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 119/223 (53%), Positives = 151/223 (67%), Gaps = 6/223 (2%) Query: 1 VLGASAVAALLLAALSTLVSSVATARSFTRLSRVRDAMDVIASGTGDLTQRLPVTGRDEV 60 +LG SAVA L + LV+ RS TR A GDLT ++ T +DE Sbjct: 192 MLGLSAVAIALCVIAAWLVT-----RSITRPLN-EAVSVASAVAAGDLTVQIGATSKDET 245 Query: 61 AQIASSFNRFVDKIEHVLLEIRDSSRTIHMASRDIASGNLDLSSRTEAQASSLEETAAAM 120 + ++ D + ++ E+R S TI+ AS +IA+GNLDLSSRTE QA +LEETA+AM Sbjct: 246 GALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEETASAM 305 Query: 121 EQITSSVQNNTDNAIQANRLSASASDIAGRGGDMVEQVVQAMNAINSSSRKVVEIISVID 180 E++TS+V+ N DNA QAN L+A+AS++A +GG +V QVVQ M IN +SRK+V+IISVID Sbjct: 306 EELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDIISVID 365 Query: 181 GIAFQTNILALNAAVEATRAGEQGRGFAVVAXAPLPPPRRSKS 223 GIAFQTNILALNAAVEA RAGEQGRGFAVVA +RS S Sbjct: 366 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAS 408 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.124 0.316 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 462,160 Number of extensions: 15519 Number of successful extensions: 290 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 254 Number of HSP's successfully gapped: 70 Length of query: 223 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 141 Effective length of database: 1,231,600 Effective search space: 173655600 Effective search space used: 173655600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)