BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0309.p
         (117 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra...   128   1e-31
gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen...   101   2e-23
gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen...    83   5e-18
gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro...    80   4e-17
gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I p...    74   4e-15

>gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 625

 Score =  128 bits (322), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 80/93 (86%)

Query: 1   VEQVRIGEESVAKTGATIRTVVESVKKVSDVVAEITSASLEQSRGISQTNEAVGQMDQVT 60
           V QV+ GE++VA+ GATIR+VV+SV+KVSDVVAEIT+AS EQS+GI+Q N+AV  MDQ T
Sbjct: 527 VGQVQAGEDTVAQAGATIRSVVDSVQKVSDVVAEITAASREQSQGINQANDAVAHMDQTT 586

Query: 61  QQNAALVEEAAASAQELQEQASRLASIVAQFRL 93
           QQNAALVE+AAA AQ LQEQA RLA IVA FRL
Sbjct: 587 QQNAALVEQAAAGAQSLQEQAERLAGIVALFRL 619


>gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis
           sensory transducer protein [Herbaspirillum seropedicae
           SmR1]
          Length = 567

 Score =  101 bits (251), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/95 (56%), Positives = 73/95 (76%)

Query: 1   VEQVRIGEESVAKTGATIRTVVESVKKVSDVVAEITSASLEQSRGISQTNEAVGQMDQVT 60
           V+QV +G   V K G TI  VV SV++V+DV++EI++AS EQ++GI Q N+A+ QMD+VT
Sbjct: 423 VQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDEVT 482

Query: 61  QQNAALVEEAAASAQELQEQASRLASIVAQFRLGG 95
           QQNAALVEEAA+++Q L  QA RL+ +V  FRL G
Sbjct: 483 QQNAALVEEAASASQSLSHQAQRLSELVGVFRLPG 517


>gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis
           sensory transducer protein [Herbaspirillum seropedicae
           SmR1]
          Length = 684

 Score = 83.2 bits (204), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 74/93 (79%)

Query: 1   VEQVRIGEESVAKTGATIRTVVESVKKVSDVVAEITSASLEQSRGISQTNEAVGQMDQVT 60
           V++V  G + VA+ G+T+  VV SV++V+D+V EI++AS EQS GI++   AV QMD+ T
Sbjct: 501 VQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVNQMDEAT 560

Query: 61  QQNAALVEEAAASAQELQEQASRLASIVAQFRL 93
           QQNAALVE+AAA+A+ LQEQA+ LA++VA F+L
Sbjct: 561 QQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKL 593


>gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 576

 Score = 80.1 bits (196), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 78/113 (69%), Gaps = 5/113 (4%)

Query: 1   VEQVRIGEESVAKTGATIRTVVESVKKVSDVVAEITSASLEQSRGISQTNEAVGQMDQVT 60
           VE+V  G   V + GAT+  VV SVK+V+DVVAEIT+AS EQS GI Q N+A+ QMD+VT
Sbjct: 422 VERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 481

Query: 61  QQNAALVEEAAASAQELQEQASRLASIVAQFRLGGGEPENKSNSVTLPYAIPL 113
           QQNAALVE+AAA+AQ LQEQ+ RL+  V  FRLG       S     P + P+
Sbjct: 482 QQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQPS-----PLSAPV 529


>gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I
           protein [Herbaspirillum seropedicae SmR1]
          Length = 516

 Score = 73.6 bits (179), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 74/93 (79%)

Query: 1   VEQVRIGEESVAKTGATIRTVVESVKKVSDVVAEITSASLEQSRGISQTNEAVGQMDQVT 60
           V +V  G   V + G+T+  VVESVK+V+DVV+EI++AS EQS GI + N AV QMD+VT
Sbjct: 423 VSKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGIDEINRAVTQMDEVT 482

Query: 61  QQNAALVEEAAASAQELQEQASRLASIVAQFRL 93
           QQNAALVEEAAA+AQ +QEQASRLA+ V+ F+L
Sbjct: 483 QQNAALVEEAAAAAQSMQEQASRLAATVSVFKL 515


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.304    0.119    0.292 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 200,245
Number of extensions: 3697
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 59
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 59
Length of query: 117
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,269,480
Effective search space: 54587640
Effective search space used: 54587640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 124 (52.4 bits)