BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0307.p
         (290 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309908|ref|YP_003774000.1| Zn-dependent hydrolase [Herbasp...   236   2e-63
gi|300312891|ref|YP_003776983.1| Zn-dependent beta-lactamase dom...   150   1e-37

>gi|300309908|ref|YP_003774000.1| Zn-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 331

 Score =  236 bits (601), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 121/290 (41%), Positives = 169/290 (58%), Gaps = 12/290 (4%)

Query: 1   MLGGFEITALNDGTLELPVDQFLTNTTPQKTNEVLAAHYLES--PL--ETSYNAFLINTG 56
           ++G F++T L DGT  +P DQ +           L A + ++  P+  ETS NAFLI+TG
Sbjct: 48  LVGDFKVTVLTDGTTPVPFDQIMHGMD----KHALTAQFRDAGEPVNRETSINAFLIDTG 103

Query: 57  GKLILIDTGAGNIFGPRLGKLAANMSASGYTPSQVDEIYITHMHADHIGGLTTDGKMNFS 116
            + ILID+GAG +FG   G L   +  +GY P+ +D + +TH+H DH  GL  DG+  F 
Sbjct: 104 ERRILIDSGAGKVFGSCCGHLVETLKIAGYDPASIDAVLLTHVHGDHSAGLARDGERQFP 163

Query: 117 NAIIRANRTELDYWLSEASMAKAPEGNRGDQKGTYRRAMTIMAPYIKAGRIRPFDGEEEL 176
           NA +   ++ELDYW+S+++ A+A    +   +  +      +APY+ AGRIR F G   L
Sbjct: 164 NADVFLAKSELDYWMSDSAKAQA----KASHQQMFVEGRAALAPYLAAGRIRTFSGRTTL 219

Query: 177 TPGIRAYQSAGHTPGHVGYMIESQGNRLMVVGDIIHVAAIQFQDPTVSVAFDSDSKQAEK 236
            PGI A  + GHTPGH  Y IES+G R+ VVGDIIH A +Q   P V+V FD+D  QA +
Sbjct: 220 FPGIEAIPAPGHTPGHSFYDIESRGRRMRVVGDIIHAAEVQLPHPNVTVDFDADEAQAAR 279

Query: 237 ERIKEFTSIADGKILFAAAHVPFPGLGRLRAKQHGFQWFPVNYSAGNNNV 286
            RI    ++A    L A  H+ FPGLG +     GF W P+ YSA   +V
Sbjct: 280 TRIAALEALAQSHELVAGPHLSFPGLGHILRAGDGFAWAPIPYSAVVRDV 329


>gi|300312891|ref|YP_003776983.1| Zn-dependent beta-lactamase domain
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 276

 Score =  150 bits (379), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 134/257 (52%), Gaps = 10/257 (3%)

Query: 2   LGGFEITALNDGTLELPVDQFLTNTTPQKTNEVLAAHYLESPLETSYNAFLINTGGKLIL 61
           +G F +TA++DG L  P+ + L+N  P +   +  A  +  P     N +LI +  + +L
Sbjct: 8   IGDFSVTAISDGFLSAPL-ELLSNIDPAEATRLQHAAGMSDPSAIHINCYLIRSPTQTVL 66

Query: 62  IDTGAGNIFGPRLGKLAANMSASGYTPSQVDEIYITHMHADHIGGLT-TDGKMNFSNAII 120
           +D GAG  F    G+L  N+  +G  PS +D + +TH H DHIGGL  + G   F +A +
Sbjct: 67  VDAGAGG-FKQWGGRLQDNLKRAGVLPSDIDTVLLTHAHPDHIGGLLDSAGDRAFPDAEL 125

Query: 121 RANRTELDYWLSEASMAKAPEGNRGDQKGTYRRAMTIMAPYIKAGRIRPFDGEEELTPGI 180
                ELD+W ++A+  +A E  RG+    +  A  +   Y    R+R F G E L PGI
Sbjct: 126 VVQGQELDFWENDANFCRASERARGN----FIFARRVFVKY--RDRLRTFAGGEVL-PGI 178

Query: 181 RAYQSAGHTPGHVGYMIESQGNRLMVVGDIIHVAAIQFQDPTVSVAFDSDSKQAEKERIK 240
            A    GHT GH GY I S G  L++ GDI+H   +Q   P VS+AFD D   A   R+ 
Sbjct: 179 SAQLLPGHTDGHCGYHINSNGQGLLIWGDIVHFPHLQIARPDVSIAFDLDPHLATATRVH 238

Query: 241 EFTSIADGKILFAAAHV 257
               ++  ++L A  H+
Sbjct: 239 LLDMVSADQLLIAGMHL 255


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 962,378
Number of extensions: 40507
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 2
Length of query: 290
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,222,130
Effective search space: 251758780
Effective search space used: 251758780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)