BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0306.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311575|ref|YP_003775667.1| hypothetical protein Hsero_2260...   234   5e-63

>gi|300311575|ref|YP_003775667.1| hypothetical protein Hsero_2260
           [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score =  234 bits (596), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 144/249 (57%), Positives = 169/249 (67%), Gaps = 19/249 (7%)

Query: 2   TMSTPS-----PQSIHSGLWLASQLALGGARCIDTGFAALSKELPGRGWPTGALIDLLLQ 56
           TM +PS     P++IH  LWLASQLA G  R + +GF AL  ELPGRGWPTG LI+LLL 
Sbjct: 39  TMLSPSSPARTPETIHPALWLASQLARGNGRGVSSGFEALDAELPGRGWPTGVLIELLLP 98

Query: 57  QPGVGELRLLGPAL---QALAP----HRIALVQTPHAPQIIGWHQNGVDASRLLSVRTAT 109
           Q GVGELRLL P L   Q L P     RIAL+Q PHA    GW   GV A+RLL ++  T
Sbjct: 99  QDGVGELRLLRPLLAQPQRLRPGAPSGRIALLQAPHAINAPGWAAMGVPATRLLQLQADT 158

Query: 110 SADAAWAAEQILKSGSCAALLLWQRHLRK---DSLRRLHLAAQSGNTLFVMLRPLSCAQD 166
             DA WAAEQ+L++ SC ALL+WQ  LRK   D LRRLH+AAQ+G TLF MLRPL+CA++
Sbjct: 159 PVDACWAAEQVLRADSCQALLMWQARLRKGDHDLLRRLHVAAQAGQTLFFMLRPLACARE 218

Query: 167 ASPXG--GGGGPRGPGIDIGFIKRRGPQRDEPLFISL-PSLNLLHH-APVDRRTPAPAAV 222
           ASP        P   G+DIGF+KRRGP R+  LF+ L PS NL  H +PVDRRTPA AA 
Sbjct: 219 ASPAPLRLTLRPAPGGLDIGFLKRRGPLREHSLFLPLTPSPNLQRHVSPVDRRTPATAAA 278

Query: 223 GSVLSELVG 231
           GS+ SEL G
Sbjct: 279 GSLPSELAG 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 730,693
Number of extensions: 28702
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)