BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0296.p
         (182 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312487|ref|YP_003776579.1| multidrug resistance transport ...   249   9e-68
gi|300312565|ref|YP_003776657.1| multidrug resistance transmembr...   122   2e-29
gi|300312016|ref|YP_003776108.1| multidrug resistance A (translo...   115   2e-27
gi|300311421|ref|YP_003775513.1| multidrug resistance efflux pum...    65   2e-12

>gi|300312487|ref|YP_003776579.1| multidrug resistance transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 397

 Score =  249 bits (636), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 129/166 (77%), Positives = 148/166 (89%)

Query: 12  RLRVHSIEAQVRQARAQGETARAQFDAANVNLGSTQVTASVAGRIGDKQVRVGQFVSAGT 71
           +LRV S++AQVRQA+AQGETA+AQ+DAA+VNLG T++ ASV GRIGDKQVRVGQFVS GT
Sbjct: 209 QLRVRSLQAQVRQAQAQGETAKAQYDAASVNLGYTEIRASVDGRIGDKQVRVGQFVSPGT 268

Query: 72  RLMTVVPSDFYVVANFKETQIGSMRTGQPVAIKVDALPGTKFKGHVESIAPGTGAQFSLL 131
           R+MTVVP+ FYV ANFKETQIG MR GQP  IKVDALPG +F GHVES++PGTGAQFSLL
Sbjct: 269 RMMTVVPTRFYVSANFKETQIGIMRIGQPAIIKVDALPGVEFHGHVESLSPGTGAQFSLL 328

Query: 132 PPQNATGNFTKIVQRVPVRIAVDASAEDRRIFVAGLSVTAEVDTAA 177
           PPQNATGNFTKIVQRVPVR+A+DA+ E+ R FVAGLSVT EV+T A
Sbjct: 329 PPQNATGNFTKIVQRVPVRVAIDATPEETRAFVAGLSVTVEVNTIA 374


>gi|300312565|ref|YP_003776657.1| multidrug resistance transmembrane
           efflux pump protein [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  122 bits (305), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 96/146 (65%), Gaps = 2/146 (1%)

Query: 32  ARAQFDAANVNLGSTQVTASVAGRIGDKQVRVGQFVSAGTRLMTVVP-SDFYVVANFKET 90
           ARA+ + A ++L  T + A V G I  +QV+VGQ V +G  L++VVP    +V ANFKE 
Sbjct: 242 ARAKLEQAKLDLERTVLRAPVDGVIARRQVQVGQRVQSGATLLSVVPLQQMHVDANFKEG 301

Query: 91  QIGSMRTGQPVAIKVDALPGT-KFKGHVESIAPGTGAQFSLLPPQNATGNFTKIVQRVPV 149
           Q+  +R GQPV +K D   G+ ++ G V  ++ GTG+ F+++P QNATGN+ K+VQR+PV
Sbjct: 302 QLTKVRIGQPVTMKADLYGGSVEYHGVVTGLSGGTGSAFAVIPAQNATGNWIKVVQRLPV 361

Query: 150 RIAVDASAEDRRIFVAGLSVTAEVDT 175
           RI++D     +R    GLS+  E+DT
Sbjct: 362 RISLDPKELAQRPLSVGLSMVVEIDT 387


>gi|300312016|ref|YP_003776108.1| multidrug resistance A
           (translocase) transmembrane secretion protein
           [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score =  115 bits (288), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/138 (45%), Positives = 85/138 (61%), Gaps = 2/138 (1%)

Query: 39  ANVNLGSTQVTASVAGRIGDKQVRVGQFVSAGTRLMTVVPSD-FYVVANFKETQIGSMRT 97
           A +N     + A V+G +  + V+VGQ ++AG  LM +VP +  ++ ANFKE+Q+  +R 
Sbjct: 209 AYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLMAIVPLEQIWIDANFKESQLQHIRI 268

Query: 98  GQPVAIKVDALPGT-KFKGHVESIAPGTGAQFSLLPPQNATGNFTKIVQRVPVRIAVDAS 156
           GQPV +  D    + K+KG V   + GTG  FSLLP QNATGN+ K+VQRVPVRIA+D  
Sbjct: 269 GQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLLPAQNATGNWIKVVQRVPVRIALDPE 328

Query: 157 AEDRRIFVAGLSVTAEVD 174
                    GLS TA VD
Sbjct: 329 QVRAHPLRIGLSTTATVD 346


>gi|300311421|ref|YP_003775513.1| multidrug resistance efflux pump
           protein [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score = 65.5 bits (158), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 15/143 (10%)

Query: 37  DAANVNLGSTQVTASVAGRIGDKQVRVGQFVSAGTRLMTVVPS-DFYVVANFKETQIGSM 95
           D A +NL  T+V + V G I +  VR G + +AG   + V+ S  F+V A F+ET++  +
Sbjct: 172 DTARLNLERTKVFSPVDGYITNLNVRRGDYAAAGAAKIAVIDSHSFWVYAYFEETKLPLL 231

Query: 96  RTGQPVAIKVDALPGTKFKGHVESIAPGTGAQFSLLPPQ--------NATGNFTKIVQRV 147
             G    I++  + G   +GHV+SIA G    +    PQ        N T N+ ++ QR+
Sbjct: 232 SIGDRARIQL--INGASMEGHVDSIARGI---YDRDNPQSRELTADVNPTFNWVRLAQRI 286

Query: 148 PVRIAVDASAEDRRIFVAGLSVT 170
           PVRI +D   E+  +  +GL+ T
Sbjct: 287 PVRIQLDKVPEN-VLLASGLTCT 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.129    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 479,983
Number of extensions: 18852
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 4
Length of query: 182
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,241,070
Effective search space: 126589140
Effective search space used: 126589140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)