BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0291.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311870|ref|YP_003775962.1| hypothetical protein Hsero_2555...   405   e-114

>gi|300311870|ref|YP_003775962.1| hypothetical protein Hsero_2555
           [Herbaspirillum seropedicae SmR1]
          Length = 285

 Score =  405 bits (1042), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/242 (78%), Positives = 214/242 (88%)

Query: 34  GPDCSRPYTLALHDHGLLYSADTDTGIDKDFADELIRRSGCKVGVSLMSRVRIWQLIESG 93
           GPDCSRPYTLALHDHGLLYS+ TDTGIDKDFADELIRRSGCKV VSLMSR RIWQLIESG
Sbjct: 44  GPDCSRPYTLALHDHGLLYSSATDTGIDKDFADELIRRSGCKVNVSLMSRARIWQLIESG 103

Query: 94  ALDFSLSGIASPERRRFASFAWYFSNKYYLLVRKDAGMRQLVEFERSETFRLGVIRSFRY 153
           ALDFSLSGI + +R +FASFAWYFSNKYYLLVRKDAG+ QL +  R+E F LGVIR FRY
Sbjct: 104 ALDFSLSGITNAQRDQFASFAWYFSNKYYLLVRKDAGVMQLADVTRNERFHLGVIRGFRY 163

Query: 154 SASANRLVDKLTAANRVTQAGGLDPLYQALMANRIQGMIMEPFDYPVVEEKHIRDVTAII 213
           SA+ANR+VD+LTA+NRV+QAGGL+PLY AL+ +RIQGMIMEPFDYPVV+EK IRD T II
Sbjct: 164 SANANRMVDQLTASNRVSQAGGLEPLYDALLLDRIQGMIMEPFDYPVVQEKRIRDATTII 223

Query: 214 EFNDPSIPHGLIMSNKALPPGERDKWRALVDEMRADGTVRRIFEKYFPPALAASMLDFQA 273
            F+DPS+PHGLIMS KAL P E+DKWRALVD MRADGTV RIF+KYF   LAASM+ FQ+
Sbjct: 224 SFDDPSVPHGLIMSRKALSPAEQDKWRALVDGMRADGTVLRIFQKYFNAELAASMVQFQS 283

Query: 274 QP 275
           +P
Sbjct: 284 KP 285


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 842,260
Number of extensions: 33471
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)