BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0290.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [...   281   4e-77
gi|300313029|ref|YP_003777121.1| two component hybrid sensor his...    54   8e-09

>gi|300311871|ref|YP_003775963.1| EAL domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1036

 Score =  281 bits (718), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 140/227 (61%), Positives = 167/227 (73%), Gaps = 2/227 (0%)

Query: 1   MLHGVQGLFTANGKFDRTALHDYVASLNLDANFSGIQAIGAEEWIGNADKTAHIARMHEL 60
           MLHGVQGL  A G  DR+   DYV +LNLDANFSGIQAI  EEW+  A   AH+ARM   
Sbjct: 61  MLHGVQGLVAATGAIDRSQFRDYVQALNLDANFSGIQAIAVEEWVPAAALPAHLARMERQ 120

Query: 61  GFSN-YAIRPAGERPDYAPIIMREPYVGRNRVAFGFDPWAEPNRRRAMEKARDSGMAAIS 119
           G    Y IRPAGER  YAP ++REPYVGRNR  FGFD W++P RR AMEKARDSGMA IS
Sbjct: 121 GLEGGYQIRPAGERSAYAPTVLREPYVGRNRTPFGFDQWSDPVRRSAMEKARDSGMATIS 180

Query: 120 GKVKLDLDADGQGQPSFLMYLPIYARGMPQSTIAERRASLIGWVHASFRMSDVVASLYGE 179
           GKV++ L ADGQ  P+F+MYLP+Y RG P +TIA+RRASL+GWVHA+FRMSDV+ASLYGE
Sbjct: 181 GKVEV-LAADGQRYPTFMMYLPLYERGKPPTTIAQRRASLVGWVHATFRMSDVIASLYGE 239

Query: 180 QPMGVAFAIYDGVEPSTDALLYHSATGLDQKKPTLISATEYLVVAGH 226
               + F++YDGV+ +  ALLY S    +  + T +SA EY+VV  H
Sbjct: 240 NSHTIVFSLYDGVQATPQALLYQSRQHEEAPQATRLSADEYVVVGNH 286


>gi|300313029|ref|YP_003777121.1| two component hybrid sensor
           histidine kinase/response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1524

 Score = 54.3 bits (129), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 3/177 (1%)

Query: 2   LHGVQGLFTANGK--FDRTALHDYVASLNLDANFSGIQAIGAEEWIGNADKTAHIARMHE 59
           L G +G   A G+    R  L  Y+ S +L   F      G    +  + + A+  ++ +
Sbjct: 81  LRGERGAILAIGEHALTRERLLRYMDSRDLATEFPWAGGFGFIRHVPLSARAAYEQQVRQ 140

Query: 60  LGFSNYAIRPAGERPDYAPIIMREPYVGRNRVAFGFDPWAEPNRRRAMEKARDSGMAAIS 119
                 +I    E P    +I     +  NR A G D  +   RR A + A  +G A ++
Sbjct: 141 GRMLFPSITQLAENPGELYVIEYIEPIEANRKALGLDIASSQARRSAADHAMLTGRAELT 200

Query: 120 GKVKLDLDADGQGQPSFLMYLPIYARGMPQSTIAERRASLIGWVHASFRMSDVVASL 176
             + L +  DG    ++L  LPIYA  +   T+ ER+  +IGW +A   + D+++ L
Sbjct: 201 PPIHL-VQKDGASANAYLFLLPIYAGSVTPPTLHERQEKIIGWAYAPLSVHDIISEL 256


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 784,103
Number of extensions: 34687
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)