BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0283.p
         (615 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309397|ref|YP_003773489.1| ferrous iron transport B transm...   633   0.0  

>gi|300309397|ref|YP_003773489.1| ferrous iron transport B
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 608

 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/612 (56%), Positives = 435/612 (71%), Gaps = 19/612 (3%)

Query: 1   VGNPNCGKTALFNRLTGARQKVANYAGVTVERKAGRFVSGSGAAYRLVDLPGTYSLSALT 60
           VGNPNCGKTALFN+LTGARQKVANYAGVTVERK+G F + SG   R+VDLPG YSL +++
Sbjct: 11  VGNPNCGKTALFNQLTGARQKVANYAGVTVERKSGSFTAPSGRQVRVVDLPGAYSLQSVS 70

Query: 61  PDEAVTRAVLLGERADEALPDLIVLVADASKLRLNLKLAIEVLRLQRPTILALNMCDVAR 120
           PDE VT+AVL G    EA+PDLIV VADA+ LRL+L+  +EV RL RP +LALNM D A 
Sbjct: 71  PDERVTQAVLQGRYPGEAVPDLIVCVADATNLRLHLRFVLEVRRLGRPMVLALNMMDAAA 130

Query: 121 KRGIEVDAIRLSAELGIPVVETVAVQQQGATALADAVDAWRNRHPDNLPDAWISRRFGDA 180
           +RGI +D   LS  LG+PV+ETVAV++ GA AL  A+D         +PD          
Sbjct: 131 RRGIRIDVAALSQRLGMPVIETVAVKRGGARALVAAIDGGEPVAAPAVPDI--------- 181

Query: 181 TTPMSATERQQAVRSILETAVAERPQARTAEDRIDAWVLHPVFGYVLLLVLLFTIFQAVF 240
                  +    VR++L   V         +D ID   LHPV G +LL + +F +FQAV+
Sbjct: 182 ------DDLHVEVRALLAVTVVMPAPTDGRDDAIDRIALHPVLGVLLLALTMFLVFQAVY 235

Query: 241 SWSALPMDMIKSGIDDIGALVTQFMPEGLLRSLIVDGIISGVGSVLVFLPQILVLFFFIL 300
           +      D I  G   +G +V +++PEG LR L+ DG+++G+G+VL FLPQILVLFFFIL
Sbjct: 236 AIGKPMTDAIADGFGTLGGVVGEWLPEGPLRGLVTDGLVAGLGTVLGFLPQILVLFFFIL 295

Query: 301 LLEDSGYLPRAAFLLDRLMGSVGLSGRAFIPLLSSFACAIPGVMATRTIQNPRDRLATIM 360
           LLE+SGYLPRAAF+LD+LM SVGLSGR+FIPLLSSFACAIPG+M TR+I +PRDRLATI+
Sbjct: 296 LLEESGYLPRAAFVLDKLMVSVGLSGRSFIPLLSSFACAIPGIMGTRSITDPRDRLATIL 355

Query: 361 IAPLMTCSARLPVYALIIGAFIPDRAV-GIFNLQGLVLFGLYVLGIVSAMAVAYVFKRVI 419
           +APLMTCSARLPVYAL+IGAFIP R V G+FNLQGL LF LYV GI +AM VA+V KR+ 
Sbjct: 356 VAPLMTCSARLPVYALLIGAFIPHRPVLGVFNLQGLALFCLYVAGIAAAMLVAWVAKRIG 415

Query: 420 AKGRRQPLLLELPNYHVPHLRNLALGLWERARIFITRVGTIILALMVILWFLSTFPGAPD 479
              + + LL+ELP+Y  PH R++ALGLWER  IF+ R+  ++LAL V++W + TFP  P 
Sbjct: 416 NARQERALLMELPSYRWPHWRDIALGLWERGAIFLKRLTGVMLALTVLMWAICTFPAPPA 475

Query: 480 GAVGPAIQYSLAGRIGSFLEPLFAPIGFNWQIAIALIPGLAAREVAVGALGTVYALSASG 539
            A   AI YS+AG IG  L+ LFAP+GFNWQI+++LIP  AARE AV  L TVYA+   G
Sbjct: 476 QATRAAIDYSIAGYIGHSLQYLFAPLGFNWQISLSLIPAFAARETAVATLATVYAV---G 532

Query: 540 DQLASALEPMLTQTWSLPTALSLLIWYVFAPQCISTLSIVKRETNSWKPALAMAAYMFAL 599
            +  +AL+  L    SL +ALSL++W+ FAPQC+STL+I++RET SW+       YMF L
Sbjct: 533 GEEGAALQSALASHISLASALSLMVWFAFAPQCMSTLAIIRRETQSWRMVALSFGYMFVL 592

Query: 600 AYLASLATFRLA 611
           AY AS  T+ +A
Sbjct: 593 AYAASFLTYNVA 604


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,813,364
Number of extensions: 75998
Number of successful extensions: 389
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 524
Effective length of database: 1,188,985
Effective search space: 623028140
Effective search space used: 623028140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)