BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0276.p
         (314 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310572|ref|YP_003774664.1| drug/metabolite transporter (DM...   321   6e-89

>gi|300310572|ref|YP_003774664.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  321 bits (822), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 176/301 (58%), Positives = 214/301 (71%), Gaps = 1/301 (0%)

Query: 5   ILVGVGNGVAAGAFWGLVFLAPQVLGSFSALQLSAARYLAYGVVAVLLLAPRWRTLSGRL 64
           IL G+     AGA WGLVFLAP++  SFS  QL+A RYLAYG+ A +L+APR R L   L
Sbjct: 6   ILQGILYSALAGAAWGLVFLAPELTRSFSPWQLTAGRYLAYGLFAGVLIAPRLRRLLPHL 65

Query: 65  GRAEWLALAYLSLLGNILYYLFLASAVQWAGGASTSLIIGLLPVVVTLVGARDEGALKLS 124
           GR EW AL +LSLLGN++YY+FLASAVQ  G A TSL+IG LPV V+++G+R EGA+ L 
Sbjct: 66  GRDEWRALVWLSLLGNVVYYVFLASAVQLGGMAMTSLVIGFLPVAVSIIGSRGEGAVPLR 125

Query: 125 SLMAPLALCLLGVGLVGVQALSAEHATTDLATRAAGLLCAFGALASWSVYSVRNSRWLSR 184
            L+  LAL L G+  V  Q+LS   A         G  CA  AL SW+ Y+V NSRWL+R
Sbjct: 126 KLVPSLALGLAGIACVAWQSLSVS-AAGQARDSVIGFFCALAALISWTTYAVGNSRWLAR 184

Query: 185 RPDISSHDWSLLTGVVTGALALLLVVPAFTQGMDGHGGSDWLRFWAVAAAVAIFASVVGN 244
              IS+HDW+LL GVVTG L+L + VPAFT  +  H G DWL F AV+A VAI AS+ GN
Sbjct: 185 LHHISAHDWNLLIGVVTGLLSLFVAVPAFTVMLQPHPGHDWLHFAAVSAGVAICASLFGN 244

Query: 245 AFWNRASRLLPLTLTGQMIIFETLFALLYGFLWEQRWPTRLEVLAIVCLVSGVVWCASLH 304
           A WN+ASRLLPLT+ GQMI+FETLFALLYGFLWEQRWPT LE+ A+V + + V+ C S H
Sbjct: 245 ACWNKASRLLPLTMIGQMILFETLFALLYGFLWEQRWPTLLEIAAMVLVTASVLLCVSAH 304

Query: 305 R 305
           R
Sbjct: 305 R 305


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.137    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 742,529
Number of extensions: 23230
Number of successful extensions: 166
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,217,395
Effective search space: 278783455
Effective search space used: 278783455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)