BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0275.p
         (122 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311595|ref|YP_003775687.1| two component response regulato...    97   3e-22
gi|300310564|ref|YP_003774656.1| regulator of the two-component ...    86   7e-19

>gi|300311595|ref|YP_003775687.1| two component response regulator
          protein [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score = 97.4 bits (241), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 66/90 (73%), Gaps = 1/90 (1%)

Query: 1  MPNFIDPTDFEALKQDDALPSPSGVRLNIMRMCRQEDVSLVELVTQIQADPVLGGRIIKI 60
          M  ++DP  F  ++  + LP+PSGVRL IM+MC+QED++L ELV Q+Q DPVL GR+I+I
Sbjct: 1  MSTYVDPQTFREMQDSEVLPAPSGVRLKIMQMCQQEDIALPELVAQVQGDPVLAGRLIQI 60

Query: 61 GNGASINKGRPIVAISKDVLLMXDRN-VRQ 89
           N  +INKGR + +++ ++LLM   + VRQ
Sbjct: 61 ANIPNINKGRMVASVNVELLLMVGLHAVRQ 90


>gi|300310564|ref|YP_003774656.1| regulator of the two-component
          system protein [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 86.3 bits (212), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 60/90 (66%), Gaps = 1/90 (1%)

Query: 1  MPNFIDPTDFEALKQDDALPSPSGVRLNIMRMCRQEDVSLVELVTQIQADPVLGGRIIKI 60
          M  FI+PT F+ L+   ALPSP GVRL IMR+C Q++  + EL+  +QADP L GRII+I
Sbjct: 1  MLTFIEPTLFDKLRSAQALPSPGGVRLTIMRLCAQDNPDMAELIHLVQADPALSGRIIRI 60

Query: 61 GNGASINKGRPIVAISKDVLLMXD-RNVRQ 89
           N  +  + RPI ++S D LL+   + VRQ
Sbjct: 61 VNVLNAQRVRPIASVSMDSLLLVGLQAVRQ 90


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 376,213
Number of extensions: 14099
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 2
Length of query: 122
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 48
Effective length of database: 1,269,480
Effective search space: 60935040
Effective search space used: 60935040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)